View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_low_8 (Length: 543)
Name: NF11500_low_8
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 24 - 528
Target Start/End: Complemental strand, 53491822 - 53491318
Alignment:
| Q |
24 |
caactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatgggg |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491822 |
caactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatgggg |
53491723 |
T |
|
| Q |
124 |
ctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgctttttta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491722 |
ctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgctttttta |
53491623 |
T |
|
| Q |
224 |
acagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttac |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53491622 |
acagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttac |
53491523 |
T |
|
| Q |
324 |
aaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataac |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491522 |
aaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataac |
53491423 |
T |
|
| Q |
424 |
tgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatg |
523 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491422 |
tgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatg |
53491323 |
T |
|
| Q |
524 |
atgtc |
528 |
Q |
| |
|
|||| |
|
|
| T |
53491322 |
ttgtc |
53491318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 24 - 529
Target Start/End: Complemental strand, 53499415 - 53498911
Alignment:
| Q |
24 |
caactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatgggg |
123 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
53499415 |
caactacccattgcttgggacaaaagtttgctgaaaagttcgaggtaaaatttgaagataagaagggagagaaagcaatggtttggcagaactcatgggg |
53499316 |
T |
|
| Q |
124 |
ctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgctttttta |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
53499315 |
ctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactccttttatgtacgattgcatttatattttagtccgcttattta |
53499216 |
T |
|
| Q |
224 |
acagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttac |
323 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
53499215 |
acagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttac |
53499116 |
T |
|
| Q |
324 |
aaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataac |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |
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|
| T |
53499115 |
aaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaatacgtgctgagttagattctagagatagc |
53499017 |
T |
|
| Q |
424 |
tgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatg |
523 |
Q |
| |
|
| |||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| |
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|
| T |
53499016 |
tactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatg |
53498917 |
T |
|
| Q |
524 |
atgtcc |
529 |
Q |
| |
|
||||| |
|
|
| T |
53498916 |
ttgtcc |
53498911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 222 - 518
Target Start/End: Complemental strand, 16070303 - 16070008
Alignment:
| Q |
222 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
321 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
322 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
421 |
Q |
| |
|
||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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|
| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
422 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttat |
518 |
Q |
| |
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||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttat |
16070008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 16070520 - 16070390
Alignment:
| Q |
27 |
ctacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggcta |
126 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| ||| |||| |||||||||| ||||| ||||||| |||||||||||||||| |||||||| | |
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|
| T |
16070520 |
ctacccattgtttgggacaaaagtttgctgagaagtttgagataaactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggtt |
16070421 |
T |
|
| Q |
127 |
ttctactcgaactgtaagcttttaatgtcta |
157 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
16070420 |
ttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 482
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
444 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
482 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 32 - 515
Target Start/End: Original strand, 45354960 - 45355440
Alignment:
| Q |
32 |
cattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattcta |
131 |
Q |
| |
|
||||||||| ||||||| |||||| ||| ||| ||| |||| | |||| || ||||||||||||||||||||| |||||||| || |||| |||| || |
|
|
| T |
45354960 |
cattgtttgggacaaaattttgctaaaatgtttgagataaactatgaaaatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagta |
45355059 |
T |
|
| Q |
132 |
ctcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattg |
231 |
Q |
| |
|
||||||||||||||||| ||| ||| | |||||||| || | | ||| ||| | || ||||||||| | ||| | | |||||||| ||||||||| |
|
|
| T |
45355060 |
ctcgaactgtaagcttt-aatttcttcaatatacatgcattgcaatattggtctaaa-tatgattgcattaacgtttctttgcgctttttcaacagattg |
45355157 |
T |
|
| Q |
232 |
gagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgt |
331 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
45355158 |
gggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcctgtgccttacaaagatgc |
45355257 |
T |
|
| Q |
332 |
tgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcc |
431 |
Q |
| |
|
||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | ||||| |||| |||||| |
|
|
| T |
45355258 |
tgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgccagagacaactattctcc |
45355356 |
T |
|
| Q |
432 |
tgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
515 |
Q |
| |
|
|| | |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
45355357 |
tggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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