View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_9 (Length: 518)
Name: NF11500_low_9
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 54 - 507
Target Start/End: Original strand, 41340972 - 41341441
Alignment:
| Q |
54 |
aaaatacatttacgtgagtaaactcacgttcgactatttgattgaaatgagaaaaaacatgggagaagagcaattacctatctggtaagtaatggttggg |
153 |
Q |
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| T |
41340972 |
aaaatacatttacctgagttaactcacgttcaactatttgatggaaatgagaaaaaacatgggagaagagcaattacctatctggtaagtaatggttggg |
41341071 |
T |
|
| Q |
154 |
aaagaggtccgtacgttgtcacaacgaaaatggtcgtaacttgcttcacatggggaacaaaacaaccactataacaggactgacaaacatggtgaaacac |
253 |
Q |
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| T |
41341072 |
aaagaggtccgtacgttgtccaaacgaaaatggtcgtaacttgcttcacatggggaacaaaacaaacactataacaggactgacagacatgatgaaacac |
41341171 |
T |
|
| Q |
254 |
accatccaaccaagtccatatgtcatgttcagaaacaaacccctcgtttccacttaggagtggaagttgcattccatgaccatcgtgtacacccctccaa |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41341172 |
accatccaaccaagtccatatgtcatgttcagaaacaaacccctcgtttccacttaggagtagaagttgcattccatgaccatcgtgtacacccctccaa |
41341271 |
T |
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| Q |
354 |
gtataactaggtttgtttcttataatgacattattaagaatatctttgtttgcatattatctagtctctaaatttg----------------catatctt |
437 |
Q |
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| T |
41341272 |
gtataactaggtttgtttcttataatggcattattaagaatatctttgtttgcatattatctagtctctaaatttgcttggccattggccaacatatctt |
41341371 |
T |
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| Q |
438 |
tgttgaaaggctcatttacatgataatatgacaatagttcttattagatgacaccgtaaaatagtttcat |
507 |
Q |
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| T |
41341372 |
tgttgaaaggctcatttacatgataatatgacaatagttcttattagatgacactgtaaaatagtttcat |
41341441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 22842227 - 22842149
Alignment:
| Q |
54 |
aaaatacatttacgtgagtaaactcacgttcgacta-tttgattgaaatgagaaaaaac--atgggagaagagcaatta |
129 |
Q |
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||||||||||||||||||| |||||||| ||||||| ||||| | ||||||||||||| ||||||||||| |||||| |
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| T |
22842227 |
aaaatacatttacgtgagttaactcacgctcgactattttgacgggaatgagaaaaaacagatgggagaagaacaatta |
22842149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 43294636 - 43294719
Alignment:
| Q |
50 |
gttgaaaatacatttacgtgagtaaactcacgttcgactatttgattgaaatgagaaaaaac--atgggagaagagcaattacc |
131 |
Q |
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| T |
43294636 |
gttgaaaatacatctacatgagtcaactcacgctcaactatttgacggaaatgagtaaaaacagatgagagaagaacaattacc |
43294719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 32827058 - 32827120
Alignment:
| Q |
48 |
acgttgaaaatacatttacgtgagtaaactcacgttcgactatttgattgaaatgagaaaaaa |
110 |
Q |
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| T |
32827058 |
acgttgaaaatacacttgtgtgagttaactcatgttcgactatttgacggaaatgagcaaaaa |
32827120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 37442593 - 37442677
Alignment:
| Q |
50 |
gttgaaaatacatttacgtgagtaaactcacgttcgactatttgattgaaatgagaaaaaac--atgggagaagagcaattacct |
132 |
Q |
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||||||||||||| | | ||||| |||||||| ||| |||||||| | |||||| |||||| |||| |||||||||||||||| |
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| T |
37442593 |
gttgaaaatacatctgcatgagttaactcacgctcggctatttgacgggaatgagcaaaaacagatggaagaagagcaattacct |
37442677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 7271730 - 7271767
Alignment:
| Q |
48 |
acgttgaaaatacatttacgtgagtaaactcacgttcg |
85 |
Q |
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| T |
7271730 |
acgttgaaaatacatctacgtgagttaactcacgttcg |
7271767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 16962899 - 16962859
Alignment:
| Q |
52 |
tgaaaatacatttacgtgagtaaactcacgttcgactattt |
92 |
Q |
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| T |
16962899 |
tgaaaatacatctacgtgagttaactcacgctcgactattt |
16962859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 23806281 - 23806241
Alignment:
| Q |
48 |
acgttgaaaatacatttacgtgagtaaactcacgttcgact |
88 |
Q |
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| T |
23806281 |
acgttgaaaatacacctacgtgagttaactcacgttcgact |
23806241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 30097491 - 30097447
Alignment:
| Q |
66 |
cgtgagtaaactcacgttcgactatttgattgaaatgagaaaaaa |
110 |
Q |
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| T |
30097491 |
cgtgagttaactcacgctcgactatttgatggaaatgagcaaaaa |
30097447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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