View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_high_10 (Length: 423)
Name: NF11501_high_10
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 74 - 408
Target Start/End: Complemental strand, 2228410 - 2228081
Alignment:
| Q |
74 |
gagatttgaattacattttaacaacctcgcatctgcatcccaccccaacgaaatgacattgttcaaacaacagattgattgtctaactccataaaggatg |
173 |
Q |
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| T |
2228410 |
gagatttgaattacattttaacaacctcgcatatgcatcccaccccaacgaaatgacattgttcaaacaacagattgattgtctaactccataaaggatg |
2228311 |
T |
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| Q |
174 |
cctattacttatgatcatgttttcaatttttcagtcatttgttcttatgagatttcaagccatattctccnnnnnnncgatcacactaattgaattgttt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
2228310 |
cctattacttatgatcatgttttcaatttttcagtcatttgttcttatgagatttcaagccatattctcctttttttcgatcacac-aattgaattgttt |
2228212 |
T |
|
| Q |
274 |
gtcttttacttcttcctattctatttcgacatatatatcaaaataagttttttcctaactaatcagtcgtcaaatatagtttttctttgaagaaacgtca |
373 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2228211 |
gtcttttacttcttcctattctattttgacatatatatcaaaataagttttttc----ctaatcagtcgtcaaatatagtttttctttgaagaaacgtca |
2228116 |
T |
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| Q |
374 |
caaagacaacatcaaaaaatcaaaacaattgtttt |
408 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2228115 |
caaagacaacatcaaaaaatcaaaacaattgtttt |
2228081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 24991285 - 24991321
Alignment:
| Q |
353 |
tttttctttgaagaaacgtcacaaagacaacatcaaa |
389 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
24991285 |
tttttctttgaagaattgtcacaaagacaacatcaaa |
24991321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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