View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11501_high_11 (Length: 362)
Name: NF11501_high_11
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_high_11 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 12158715 - 12158363
Alignment:
| Q |
1 |
cctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
12158715 |
cctccaataaaggttctcattcatcatctcttagagtttgtaattgctcatttgtgatgttaatcaagttcatagcattgacgatgtcttgatcttttct |
12158616 |
T |
|
| Q |
101 |
ttgcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12158615 |
ttgcaaagcttgtgacaattcatttaacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagatcg |
12158516 |
T |
|
| Q |
201 |
tttgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacatcagttacaaaa-aatacatcaatatcaaattcaccaaagttg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
12158515 |
tttgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacattagttacaaaactatacatcgatatcaaattcaccaaagttg |
12158416 |
T |
|
| Q |
300 |
taaagtcagaactcaaacgaatatcaccataacgcttgatattaatttctctg |
352 |
Q |
| |
|
|||||||| ||||| ||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
12158415 |
taaagtcaaaactccaacaaatatcactataacacttgatattaatttctctg |
12158363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 51 - 325
Target Start/End: Original strand, 30866765 - 30867040
Alignment:
| Q |
51 |
tttgtgatgttaatcaagttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagacctttttcatca |
150 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||| |||||||||||||| || | ||| | |||| |||| | |||||| ||||| ||||| |||||||||| |
|
|
| T |
30866765 |
tttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgattgtcacaaataatttgaaatacccaagacttttttcatca |
30866864 |
T |
|
| Q |
151 |
aatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatctttcaacatttc |
250 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||||||| || ||||||| |||||||| |||||||||| |||||| ||||||||||||||| | |
|
|
| T |
30866865 |
aatgtaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctcttccatatttaactaaaacatcatctttcaacatatt |
30866964 |
T |
|
| Q |
251 |
aagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatca |
325 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||| |||||| ||||| ||||||| ||||| ||||| |
|
|
| T |
30866965 |
aagaacatcaattacagaactatacatcaatatcaaattcactaaagttccaaagtgagaactccaacgagtatca |
30867040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 4815648 - 4815305
Alignment:
| Q |
1 |
cctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttcct |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| || |||||| | ||| ||||| |||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
4815648 |
cctccaataaaggttcccatccatcatctcttagagcttgtaatcgctcctttttgatgctaattaggttcatagcattgacgatgtcttgatctttcct |
4815549 |
T |
|
| Q |
101 |
ttgcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||| | |
|
|
| T |
4815548 |
ttgcaatgcttgtgacaattcatttgaaaaacctaagatctttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagactt |
4815449 |
T |
|
| Q |
201 |
tttgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttg |
299 |
Q |
| |
|
|||||||| ||||||||||| |||| || | ||||||| |||||||||||||||||||||||| | || ||||||||||||||| ||||||||||||| |
|
|
| T |
4815448 |
tttgcttcacctcttccatctttaattgatacatcatctctcaacatttcaagaacatcagttatagaactatacatcaatatcaagttcaccaaagttg |
4815349 |
T |
|
| Q |
300 |
taaagtcagaactcaaacgaatatcaccataacgcttgatatta |
343 |
Q |
| |
|
||||| ||||||| ||||| ||||| || ||||||| |||||| |
|
|
| T |
4815348 |
caaagtgagaactccaacgagtatcatcagaacgcttcatatta |
4815305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 3 - 319
Target Start/End: Complemental strand, 23599882 - 23599565
Alignment:
| Q |
3 |
tccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttccttt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||| ||| ||||||| ||||||||||||||||| ||| | | |
|
|
| T |
23599882 |
tccaataaaggttctcattcatcatctcttagagtttgtaacaactcttttgtaatgttaaccaaattcatagcattgacgatgtcttgattttttatct |
23599783 |
T |
|
| Q |
103 |
gcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtt |
202 |
Q |
| |
|
|||| | ||||||||| | |||||| ||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||| || |
|
|
| T |
23599782 |
gcaatgtttgtgacaaattatttgaaatacccaagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatt |
23599683 |
T |
|
| Q |
203 |
tgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgta |
301 |
Q |
| |
|
| |||| ||||||||||| || |||| ||||||||||||||| | |||||||||| ||||| || |||||||||||||||||||||||||| | | |
|
|
| T |
23599682 |
ttcttcacctcttccatctttgactgtaacatcatctttcaacatattaagaacatcaattacagaactatacatcaatatcaaattcaccaaagctcca |
23599583 |
T |
|
| Q |
302 |
aagtcagaactcaaacga |
319 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
23599582 |
aagtgagaactccaacga |
23599565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 13392788 - 13392575
Alignment:
| Q |
3 |
tccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttccttt |
102 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||| |||| | ||||||||||||| |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
13392788 |
tccaataaacattctcatccatcatctctttgagtttgtaattgcttctttgtgatgttaaccaagttcataacattgacgatgtcttaatctttccttt |
13392689 |
T |
|
| Q |
103 |
gcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtt |
202 |
Q |
| |
|
||| | ||||||||||| |||||| ||||| ||||| |||||||||||||| ||| || |||| ||||||||| |||||||||||||||||||| | || |
|
|
| T |
13392688 |
tcaatgattgtgacaatttatttgaaataccaaagacttttttcatcaaatgtaatatgagtgcaaaatcaaaagtattcattagaattaaaagactatt |
13392589 |
T |
|
| Q |
203 |
tgcttctcctcttc |
216 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
13392588 |
tgcttgacctcttc |
13392575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 10068695 - 10068517
Alignment:
| Q |
6 |
aataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttcctttgca |
105 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||| |||| | ||||||||| ||| || | ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
10068695 |
aataaagattctcatccatcatctctaagagtttgtaattgtttctttgtgatgctaaccagttgcatagcattgacaatgtcttgatctttcctttgca |
10068596 |
T |
|
| Q |
106 |
aagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcat |
184 |
Q |
| |
|
| ||| |||||||||||||| || |||||||| |||||||| ||||| ||||| |||| ||||||||| ||||||| |
|
|
| T |
10068595 |
atatttgcgacaattcatttgagatgcctaagacttttttcattaaatgtaatgttagtgcaaaatcaaaaatattcat |
10068517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 29638264 - 29637921
Alignment:
| Q |
1 |
cctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttcct |
100 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || || |||||| | ||||||||| ||| | |||||||| |||||| ||||||||||||||||| |
|
|
| T |
29638264 |
cctccaataaaggttcccatccatcatctcttaaagcttgtaatcgctcctttgtgatgctaactaggttcatagcattgacaatgtcttgatctttcct |
29638165 |
T |
|
| Q |
101 |
ttgcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
29638164 |
ttgcaatgcttgtgacaattcatttgaaaaatctaagacctttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagacct |
29638065 |
T |
|
| Q |
201 |
tttgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttg |
299 |
Q |
| |
|
|||||||| ||||||||||| |||| || | ||||||| |||||||||||||||||||||||| | || ||||||||||||||| ||||||||||||| |
|
|
| T |
29638064 |
tttgcttcacctcttccatctttaattgatacatcatctctcaacatttcaagaacatcagttatagaactatacatcaatatcaagttcaccaaagttg |
29637965 |
T |
|
| Q |
300 |
taaagtcagaactcaaacgaatatcaccataacgcttgatatta |
343 |
Q |
| |
|
||||| ||||||| ||||| ||||| || ||||||| |||||| |
|
|
| T |
29637964 |
caaagtgagaactccaacgagtatcagcagaacgcttcatatta |
29637921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 83 - 305
Target Start/End: Original strand, 1624020 - 1624243
Alignment:
| Q |
83 |
gatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattc |
182 |
Q |
| |
|
|||||||||||||||| ||||||| || | | ||||||||||||| ||| | ||| | |||||||| ||||| || | |||| ||| |||||| | | |
|
|
| T |
1624020 |
gatgtcttgatctttcttttgcaatgcgtctaacaattcatttgaaatatccaagtcatttttcattaaatgtaacacgagtgcaaaactaaaattgtcc |
1624119 |
T |
|
| Q |
183 |
attagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacatcagttaca-aaaaatacatcaata |
281 |
Q |
| |
|
||||||| || |||| |||||||| |||||| |||| ||||||| | || ||||| ||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
1624120 |
attagaagtataagaccatttgcttcgcctcttgcatccttaactgatacttcttcttttaacatttcaagaacaccagttacagaattatacatcaata |
1624219 |
T |
|
| Q |
282 |
tcaaattcaccaaagttgtaaagt |
305 |
Q |
| |
|
| ||||| |||||||||| ||||| |
|
|
| T |
1624220 |
ttaaattaaccaaagttgcaaagt |
1624243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 676294 - 676637
Alignment:
| Q |
1 |
cctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttcct |
100 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || || |||||| | ||||||||| ||| | |||||||| |||||| ||||||||||||||||| |
|
|
| T |
676294 |
cctccaataaaggttcccatccatcatctcttaaagcttgtaatcgctcctttgtgatgctaactaggttcatagcattgacaatgtcttgatctttcct |
676393 |
T |
|
| Q |
101 |
ttgcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
676394 |
ttgcaatgcttgtgacaattcatttgaaaaatctaagacctttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagacct |
676493 |
T |
|
| Q |
201 |
tttgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttg |
299 |
Q |
| |
|
|||||||| ||||||||||| |||| || | ||||||| |||||||||||||||||||||||| | || ||||||||||||||| ||||||||||||| |
|
|
| T |
676494 |
tttgcttcacctcttccatctttaattgatacatcatctctcaacatttcaagaacatcagttatagaactatacatcaatatcaagttcaccaaagttg |
676593 |
T |
|
| Q |
300 |
taaagtcagaactcaaacgaatatcaccataacgcttgatatta |
343 |
Q |
| |
|
||||| ||||||| ||||| ||||| || ||||||| |||||| |
|
|
| T |
676594 |
caaagtgagaactccaacgagtatcagcagaacgcttcatatta |
676637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 41500707 - 41501002
Alignment:
| Q |
1 |
cctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttcct |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| || |||||| | ||||||||| |||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
41500707 |
cctccaataaaggttcccatccatcatctcttagagcttgtaatcgctcctttgtgatgctaattaggttcatagcattgacgatgtcttgatctttcct |
41500806 |
T |
|
| Q |
101 |
ttgcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
41500807 |
ttgcaatgcttgtgacaattcatttgaaaaacctaagacctttttcattaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagacct |
41500906 |
T |
|
| Q |
201 |
tttgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaa |
295 |
Q |
| |
|
|||||||| ||||||||||| |||| || | ||||||| |||||||||||||||||||||||| | || ||||||||||||||| ||||||||| |
|
|
| T |
41500907 |
tttgcttcacctcttccatctttaattgatacatcatctctcaacatttcaagaacatcagttatagaactatacatcaatatcaagttcaccaaa |
41501002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 250989 - 251170
Alignment:
| Q |
3 |
tccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttgatctttccttt |
102 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| || |||||| | ||||||||||||| || ||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
250989 |
tccaataaaggttcctatccatcatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatcttgatctttccttt |
251088 |
T |
|
| Q |
103 |
gcaaagcttgtgacaattcatttgacatacctaagacctttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcat |
184 |
Q |
| |
|
|||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
251089 |
gcaatgcttgtgacaattcattcgaaatacttaagacctttttcatcaaatgcaatgtgagtgcaaaatcaaaattattcat |
251170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 19238419 - 19238332
Alignment:
| Q |
238 |
ctttcaacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatca |
325 |
Q |
| |
|
||||||| ||||||||||||||| ||||| || |||||||||||||||||| | |||||| | ||| | ||||||| ||||||||||| |
|
|
| T |
19238419 |
ctttcaaaatttcaagaacatcaattacataatgatacatcaatatcaaattaatcaaagtag-aaaatgagaactccaacgaatatca |
19238332 |
T |
|
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