View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11501_high_13 (Length: 341)

Name: NF11501_high_13
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11501_high_13
NF11501_high_13
[»] chr4 (24 HSPs)
chr4 (18-331)||(55505241-55505555)
chr4 (128-328)||(640672-640875)
chr4 (172-323)||(553283-553434)
chr4 (175-331)||(546720-546876)
chr4 (128-328)||(6006087-6006287)
chr4 (200-331)||(1524619-1524750)
chr4 (206-328)||(1545611-1545733)
chr4 (138-268)||(1600301-1600431)
chr4 (252-331)||(566073-566152)
chr4 (199-293)||(1552944-1553038)
chr4 (204-331)||(1489497-1489624)
chr4 (204-331)||(12121593-12121720)
chr4 (199-320)||(570182-570303)
chr4 (201-237)||(370760-370796)
chr4 (128-328)||(1537906-1538106)
chr4 (128-232)||(1548659-1548763)
chr4 (200-244)||(7226106-7226150)
chr4 (204-331)||(1513540-1513667)
chr4 (128-307)||(1528363-1528542)
chr4 (178-233)||(3438797-3438852)
chr4 (271-329)||(1508141-1508199)
chr4 (271-329)||(7226021-7226079)
chr4 (200-245)||(8187313-8187358)
chr4 (200-244)||(659540-659584)
[»] chr1 (4 HSPs)
chr1 (135-321)||(43633964-43634132)
chr1 (128-307)||(9580840-9581008)
chr1 (128-181)||(9586422-9586475)
chr1 (18-57)||(43995816-43995855)
[»] chr3 (3 HSPs)
chr3 (183-331)||(51113917-51114065)
chr3 (201-331)||(514864-514994)
chr3 (201-323)||(51121037-51121159)
[»] chr8 (6 HSPs)
chr8 (131-304)||(32151064-32151237)
chr8 (202-331)||(5767791-5767920)
chr8 (202-331)||(14002887-14003016)
chr8 (196-328)||(27922336-27922468)
chr8 (178-331)||(17628150-17628303)
chr8 (276-327)||(44736443-44736494)
[»] chr2 (1 HSPs)
chr2 (200-331)||(45245221-45245352)
[»] chr6 (6 HSPs)
chr6 (131-258)||(9411118-9411245)
chr6 (277-327)||(6426420-6426470)
chr6 (289-331)||(19632360-19632402)
chr6 (280-328)||(10579876-10579924)
chr6 (203-323)||(28934884-28935004)
chr6 (282-324)||(6415880-6415922)
[»] chr7 (1 HSPs)
chr7 (280-324)||(15092294-15092338)
[»] chr5 (1 HSPs)
chr5 (200-308)||(41889720-41889828)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 55505555 - 55505241
Alignment:
Q  18 gatagttttaaatatacgattctatgataattttttatttnnnnnnnnn-ttctcatggaaatagatccgaaaacaaaaacatcttacacttcatagcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55505555 gatagttttaaatatacgattctatgataattttttatttaaaaaaaaaattctcatggaaatagatccgaaaacaaaaacatcttacacttcatagcta 55505456  T
Q  117 agtacttttagagcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55505455 agtacttttagagcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgat 55505356  T
Q  217 ggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtt 316  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55505355 ggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtt 55505256  T
Q  317 tcactcccttctctg 331  Q
    |||||||||||||||    
T  55505255 tcactcccttctctg 55505241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 328
Target Start/End: Original strand, 640672 - 640875
Alignment:
Q  128 agcaaacaatgcatccttgacgcaagaagag---tttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttga 224  Q
    ||||||||  |||||||||||||||||| ||   |||||||| || |||  |||||| |||||||||||| | |  ||||||||||||||||||||||||    
T  640672 agcaaacatggcatccttgacgcaagaatagaagtttcttctctttgtcgttcaaatcaaaaccaggtggagttactatctttctcaatgatggccttga 640771  T
Q  225 aaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactccc 324  Q
    |||||||||||||||||| ||  |||||| |||||||| |||||| || || |||| |||||||| || | |||||||||||| ||| || |||||||||    
T  640772 aaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacctctcttaattctttgcagttttctaccacatgattcactccc 640871  T
Q  325 ttct 328  Q
    ||||    
T  640872 ttct 640875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 172 - 323
Target Start/End: Original strand, 553283 - 553434
Alignment:
Q  172 tcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgt 271  Q
    |||||||||| |||||||||||| |||  ||||||||||||||||| || ||||  |||||||||| |||||||  | ||||||||||||||||||||      
T  553283 tcactcaaatcaaaaccaggtggagctcctatctttctcaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaacccc 553382  T
Q  272 tcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcc 323  Q
     ||| | ||||||||| ||||||||||||||||||| ||| || ||||||||    
T  553383 ccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcc 553434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 331
Target Start/End: Original strand, 546720 - 546876
Alignment:
Q  175 ctcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttca 274  Q
    |||||||  ||||||| ||| ||| ||||||||||||||||||||||| |||||| ||||||  ||||  |  || ||| |||||||| |||| |  | |    
T  546720 ctcaaatccaaaccagatggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattacaagccctta 546819  T
Q  275 agttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctg 331  Q
    | |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  546820 aattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctg 546876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 328
Target Start/End: Original strand, 6006087 - 6006287
Alignment:
Q  128 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 227  Q
    ||||||||| |||||| |||||||||||||||||   |||   ||||||  ||  |||||||||||| || ||||||||||||||||||||||||| |||    
T  6006087 agcaaacaaggcatccatgacgcaagaagagttttcgcttgctgtcactacaacaaaaaccaggtggagcagttatctttctcaatgatggccttgtaaa 6006186  T
Q  228 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc 327  Q
    ||||||  ||||||||||   |||   |||||||| |||| | | ||| || |||||||| | |||| ||||||||||||  || ||  |||||||||||    
T  6006187 taccatcaagtcaacaacatcagctaccactttatgacaatcctgcaaatttatctctctcaattgtttgcagttttctacgacttgcatcactcccttc 6006286  T
Q  328 t 328  Q
    |    
T  6006287 t 6006287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 331
Target Start/End: Complemental strand, 1524750 - 1524619
Alignment:
Q  200 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 299  Q
    |||||| |||||||||||| ||||| |||| ||||||| ||||||  |||||||| ||||||  ||||||  |||| || |||||||| |||||||||||    
T  1524750 ttatctctctcaatgatggtcttgataatagcattgaggcaacaaagctagcatgaactttacaacaacccctcaaattaatctctctcagttgtgtgca 1524651  T
Q  300 gttttctaacacgtgtttcactcccttctctg 331  Q
    |||||||| ||| |  ||||||||| ||||||    
T  1524650 gttttctatcacataattcactcccctctctg 1524619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 1545611 - 1545733
Alignment:
Q  206 ttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttc 305  Q
    ||||||||||||||||||| ||||| | | |  ||| |||  ||||||||||||||||||||||  |||| |||||| |||||||||||||||||||||     
T  1545611 ttctcaatgatggccttgataatactaataaagcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttt 1545710  T
Q  306 taacacgtgtttcactcccttct 328  Q
    || | | | ||||||||||||||    
T  1545711 taccgcatctttcactcccttct 1545733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 268
Target Start/End: Original strand, 1600301 - 1600431
Alignment:
Q  138 gcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgag 237  Q
    |||||| |||| | |||||| |||| | ||||||||||||||| ||||| ||||||| |||| |||||||||||| ||||||||| ||| |||||| |||    
T  1600301 gcatccatgactcgagaagaatttcctattttcgtcactcaaaggaaaatcaggtggagctgctatctttctcaaggatggccttaaaagtaccatcgag 1600400  T
Q  238 tcaacaactctagcatgcactttatcacaac 268  Q
     |||||||  |||||| ||||| || |||||    
T  1600401 acaacaaccttagcattcacttcatgacaac 1600431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 566073 - 566152
Alignment:
Q  252 atgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctg 331  Q
    ||||||||||| |||||| | ||| ||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||    
T  566073 atgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctg 566152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 1553038 - 1552944
Alignment:
Q  199 gttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttg 293  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||   |  || |||||||  |||||| ||||| |||||||||||||||||    
T  1553038 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 1552944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 331
Target Start/End: Complemental strand, 1489624 - 1489497
Alignment:
Q  204 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 303  Q
    |||||| || |||||||||||||||| || |||| ||| |||   | ||||||||| | ||||    ||||| ||||||||||||||||||| ||| |||    
T  1489624 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttt 1489525  T
Q  304 tctaacacgtgtttcactcccttctctg 331  Q
    |||| ||| || ||||||||||||||||    
T  1489524 tctagcacatgcttcactcccttctctg 1489497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 331
Target Start/End: Complemental strand, 12121720 - 12121593
Alignment:
Q  204 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 303  Q
    |||||||||||||||||||||||||| || |||| ||| |||   |  |||||||| |  ||||   ||||| | ||||||||||||||||||||| |||    
T  12121720 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttt 12121621  T
Q  304 tctaacacgtgtttcactcccttctctg 331  Q
    |||| ||| || ||||||||| ||||||    
T  12121620 tctaccacatgcttcactcccatctctg 12121593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 570182 - 570303
Alignment:
Q  199 gttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgc 298  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||   |   |||||||||||  ||    ||||| |||||||| || ||||||||||    
T  570182 gttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagttgtgtgc 570281  T
Q  299 agttttctaacacgtgtttcac 320  Q
    ||||||||| ||| || |||||    
T  570282 agttttctaccacatgattcac 570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 370760 - 370796
Alignment:
Q  201 tatctttctcaatgatggccttgaaaataccattgag 237  Q
    ||||||||| |||||||||||||||||||||||||||    
T  370760 tatctttctgaatgatggccttgaaaataccattgag 370796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 328
Target Start/End: Complemental strand, 1538106 - 1537906
Alignment:
Q  128 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 227  Q
    ||||||||||||||||||||||  | ||||||| | | | |  ||| || ||| || |||||  ||| | ||||| |||||| || ||||||||||||||    
T  1538106 agcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacgatggccttgaaaa 1538007  T
Q  228 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc 327  Q
    || || ||||  || |||   | ||| ||||| | |||| |  ||||| ||||||||||||||||| ||||| ||||||| ||| |  ||||||||||||    
T  1538006 tatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttgagtgcatttttctagcacatacttcactcccttc 1537907  T
Q  328 t 328  Q
    |    
T  1537906 t 1537906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 1548763 - 1548659
Alignment:
Q  128 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 227  Q
    |||||||||  ||||||||| || ||||||||| | |||    |||||| |||||| ||  || ||| | ||||||||||||||||||||| ||||||||    
T  1548763 agcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtcttgaaaa 1548664  T
Q  228 tacca 232  Q
    |||||    
T  1548663 tacca 1548659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 7226150 - 7226106
Alignment:
Q  200 ttatctttctcaatgatggccttgaaaataccattgagtcaacaa 244  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||    
T  7226150 ttatctttctcaatgatggccttgaagaaaccattgaggcaacaa 7226106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 331
Target Start/End: Complemental strand, 1513667 - 1513540
Alignment:
Q  204 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 303  Q
    |||||| || |||||||||||||||| || |||| ||| |||   | ||| |||||||  ||||   ||||| ||||||||||| ||||||||||| |||    
T  1513667 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttt 1513568  T
Q  304 tctaacacgtgtttcactcccttctctg 331  Q
    |||| |||  | ||||||||| ||||||    
T  1513567 tctagcacaagcttcactcccatctctg 1513540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 307
Target Start/End: Complemental strand, 1528542 - 1528363
Alignment:
Q  128 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 227  Q
    ||||||||| |||||| ||||||||||  | ||||  ||||  ||||||  ||||||||| ||| || ||   ||||||||| | ||| | ||||  |||    
T  1528542 agcaaacaaggcatccatgacgcaagataaatttccgctttctgtcactacaatgaaaacaaggcggagccactatctttctaagtgacgaccttataaa 1528443  T
Q  228 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttcta 307  Q
    ||||||||| | ||||||   ||||  |||||||  |||||| | ||| || |||||||| |||||||||||||||||||    
T  1528442 taccattgatttaacaacatcagcaaccactttacaacaaccctgcaaatttatctctctcagttgtgtgcagttttcta 1528363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 3438852 - 3438797
Alignment:
Q  178 aaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccat 233  Q
    |||||| ||| |||||| || |||| |||||||||||||||| |||||||||||||    
T  3438852 aaatgataacgaggtggagcagttacctttctcaatgatggctttgaaaataccat 3438797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 1508199 - 1508141
Alignment:
Q  271 ttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctc 329  Q
    ||||| ||||||||||||||||||||||| ||||||| | | || ||||||||| ||||    
T  1508199 ttcaaattgatctctcttagttgtgtgcatttttctagcgcatgcttcactcccatctc 1508141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 7226079 - 7226021
Alignment:
Q  271 ttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctc 329  Q
    ||||| ||||||||||| |||||  |||||||||||| |||||| |||| |||||||||    
T  7226079 ttcaaattgatctctctcagttgcttgcagttttctaccacgtgcttcaatcccttctc 7226021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 8187358 - 8187313
Alignment:
Q  200 ttatctttctcaatgatggccttgaaaataccattgagtcaacaac 245  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||    
T  8187358 ttatctttctcagcgatggccttgaaaatatcatcgagtcaacaac 8187313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 659540 - 659584
Alignment:
Q  200 ttatctttctcaatgatggccttgaaaataccattgagtcaacaa 244  Q
    |||||||| |||| |||||||||||||||||||| ||| ||||||    
T  659540 ttatctttttcaacgatggccttgaaaataccatcgaggcaacaa 659584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 135 - 321
Target Start/End: Original strand, 43633964 - 43634132
Alignment:
Q  135 aatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccatt 234  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  43633964 aatgcatccttgatgcaagaagagtttcttctttttgtcactcaaatgaaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccatt 43634063  T
Q  235 gagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcact 321  Q
    |||                  ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  43634064 gag------------------actttatcacaaccgttcaagttgatctctcttagttgtctgcaattttctaacacgtgcttcact 43634132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 307
Target Start/End: Original strand, 9580840 - 9581008
Alignment:
Q  128 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 227  Q
    ||||||||||||||||||||| | |||||| ||||||||||  ||||||||||| |            ||| ||||||||||||| |||||||||||| |    
T  9580840 agcaaacaatgcatccttgacacgagaagattttcttctttctgtcactcaaataat-----------gctattatctttctcaacgatggccttgaaga 9580928  T
Q  228 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttcta 307  Q
    |||||||||   ||| || |||  ||||||||||| ||||||  |||| |  ||||||   ||||||||||| |||||||    
T  9580929 taccattgacgaaaccacactacgatgcactttataacaacccctcaaatcaatctcttccagttgtgtgcaattttcta 9581008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 9586422 - 9586475
Alignment:
Q  128 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaat 181  Q
    ||||||||||||||||||||| | ||||| |||||||||||  |||||||||||    
T  9586422 agcaaacaatgcatccttgacacgagaagggtttcttctttctgtcactcaaat 9586475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 43995855 - 43995816
Alignment:
Q  18 gatagttttaaatatacgattctatgataattttttattt 57  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  43995855 gatagttttaaatatacgattgtatgatgattttttattt 43995816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 183 - 331
Target Start/End: Complemental strand, 51114065 - 51113917
Alignment:
Q  183 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatc 282  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||| ||||||| ||||||   ||||||||||||||  |||||| || || || |||    
T  51114065 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatc 51113966  T
Q  283 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctg 331  Q
    |||||||||| |||||| ||||||| ||| || ||||||||||||||||    
T  51113965 tctcttagttttgtgcatttttctaccacatgcttcactcccttctctg 51113917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 331
Target Start/End: Complemental strand, 514994 - 514864
Alignment:
Q  201 tatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcag 300  Q
    ||||||||||||||||||||||||||||||||||| | |||||||  ||  ||||||||||| ||||||  | || ||||||||||| ||| ||||||||    
T  514994 tatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcag 514895  T
Q  301 ttttctaacacgtgtttcactcccttctctg 331  Q
    ||||  | ||| || ||||||||| ||||||    
T  514894 tttttcaccacatgcttcactcccgtctctg 514864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 51121159 - 51121037
Alignment:
Q  201 tatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcag 300  Q
    |||||||||||| |||| ||||||||| || |||||| ||||||    |||||| |||||||  |||    ||||||||||| |||| | ||||||||||    
T  51121159 tatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcag 51121060  T
Q  301 ttttctaacacgtgtttcactcc 323  Q
    ||||||| ||| |||||||||||    
T  51121059 ttttctaccacatgtttcactcc 51121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 304
Target Start/End: Original strand, 32151064 - 32151237
Alignment:
Q  131 aaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaatac 230  Q
    |||||| |||||| |||||||||||||||||| | |||| |||||| |||| | ||| |||||| || ||||||||||||||||||||||||||||||||    
T  32151064 aaacaaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctcaatgatggccttgaaaatac 32151163  T
Q  231 cattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagtttt 304  Q
    ||||   |||||||    ||||||||||| |||||||||  | || |||||||| || |||||| | |||||||    
T  32151164 cattttatcaacaatatcagcatgcacttgatcacaaccccttaaattgatctccctcagttgtatacagtttt 32151237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 331
Target Start/End: Complemental strand, 5767920 - 5767791
Alignment:
Q  202 atctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagt 301  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| |||| ||||| |||  ||| || | ||| || |||||||| |||||||||||||    
T  5767920 atctttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccatccaaatttatctctctgagttgtgtgcagt 5767821  T
Q  302 tttctaacacgtgtttcactcccttctctg 331  Q
    | | || ||||||  | |||||||| ||||    
T  5767820 tgtttaccacgtgcatgactcccttgtctg 5767791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 14002887 - 14003016
Alignment:
Q  202 atctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagt 301  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| |||| ||||| |||  ||| || |||||  | |||||||| ||||| |||||||    
T  14002887 atctttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagt 14002986  T
Q  302 tttctaacacgtgtttcactcccttctctg 331  Q
    | | || ||||||  | |||||||| ||||    
T  14002987 tgtttaccacgtgcatgactcccttgtctg 14003016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 27922336 - 27922468
Alignment:
Q  196 gctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtg 295  Q
    |||||||||| |||||| |||||||||||| ||||||| ||   |||||   ||||||| ||||||| |||||| | |||  | |||| ||| ||||| |    
T  27922336 gctgttatctgtctcaacgatggccttgaagataccatcgaagaaacaatattagcatgtactttatgacaaccatccaaactaatctttctcagttgag 27922435  T
Q  296 tgcagttttctaacacgtgtttcactcccttct 328  Q
    |||||||||||| ||| || |||||||||||||    
T  27922436 tgcagttttctaccacatggttcactcccttct 27922468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 331
Target Start/End: Complemental strand, 17628303 - 17628150
Alignment:
Q  178 aaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagt 277  Q
    |||||| |||||||||| ||  ||||||||||||||| |||||||| |||||||||   ||||||||   |||| | ||||| || ||||||  | ||      
T  17628303 aaatgataaccaggtggggcaattatctttctcaatgttggccttgcaaataccatcatgtcaacaatattagctttcacttcataacaaccccttaaac 17628204  T
Q  278 tgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctg 331  Q
    ||||||| || || |||||||||||||  ||||| || ||||||||||| ||||    
T  17628203 tgatctccctcagctgtgtgcagtttttcaacacatgcttcactcccttgtctg 17628150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 44736443 - 44736494
Alignment:
Q  276 gttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc 327  Q
    ||||||||||||||||||||| || |||||||  || |||||||||||||||    
T  44736443 gttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttc 44736494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 331
Target Start/End: Complemental strand, 45245352 - 45245221
Alignment:
Q  200 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 299  Q
    |||||||| |||| |||||||||||||||||||| ||| ||| |||  |||||||||||| |   ||     |||| ||||||||| | |||||||||||    
T  45245352 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 45245253  T
Q  300 gttttctaacacgtgtttcactcccttctctg 331  Q
     ||||||| ||| |||||||||||||| ||||    
T  45245252 attttctaccacatgtttcactcccttatctg 45245221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 9411118 - 9411245
Alignment:
Q  131 aaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaatac 230  Q
    |||||| |||||| | ||||||||||||||   | |||| |  || ||||| |||||||||||| | | ||||||| |||||||| ||||||||||||||    
T  9411118 aaacaaggcatccattacgcaagaagagttctctatttttggaacacaaatcaaaaccaggtggagtttttatcttgctcaatgacggccttgaaaatac 9411217  T
Q  231 cattgagtcaacaactctagcatgcact 258  Q
    |||   ||||||||   |||||||||||    
T  9411218 catatcgtcaacaatattagcatgcact 9411245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 6426420 - 6426470
Alignment:
Q  277 ttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc 327  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||| ||||||    
T  6426420 ttgatctttcttagttgtgtgcagttttctaccacttgtttcacacccttc 6426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 331
Target Start/End: Original strand, 19632360 - 19632402
Alignment:
Q  289 agttgtgtgcagttttctaacacgtgtttcactcccttctctg 331  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  19632360 agttgtttgcagttttctaccacgtgtttcactcccttctctg 19632402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 10579924 - 10579876
Alignment:
Q  280 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttct 328  Q
    |||||||| ||||||||||||||||||| ||| ||||| ||||||||||    
T  10579924 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttct 10579876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 323
Target Start/End: Original strand, 28934884 - 28935004
Alignment:
Q  203 tctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagtt 302  Q
    ||||||||||||||| |||||  ||||| | |||| | || |   ||| |||||||||| ||||| | | ||| | ||||||||||||||||||||| ||    
T  28934884 tctttctcaatgatgaccttggtaatactagtgaggctaccaaattaggatgcactttaacacaatcatccaaatagatctctcttagttgtgtgcaatt 28934983  T
Q  303 ttctaacacgtgtttcactcc 323  Q
    ||||| ||| || ||||||||    
T  28934984 ttctaccacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 6415880 - 6415922
Alignment:
Q  282 ctctcttagttgtgtgcagttttctaacacgtgtttcactccc 324  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactccc 6415922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 15092338 - 15092294
Alignment:
Q  280 atctctcttagttgtgtgcagttttctaacacgtgtttcactccc 324  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||||    
T  15092338 atctctctcaattgtgtgcagttttctagcacatgtttcactccc 15092294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 41889828 - 41889720
Alignment:
Q  200 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 299  Q
    ||||||||||||||||  |||||||| ||||||||||| | |||||  || |||  ||||||| |||||| | |||  |||||  ||| ||||| |||||    
T  41889828 ttatctttctcaatgacagccttgaagataccattgaggccacaacattaccatttactttatgacaaccatccaaactgatcattctcagttgcgtgca 41889729  T
Q  300 gttttctaa 308  Q
    ||| |||||    
T  41889728 gttctctaa 41889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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