View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11501_high_16 (Length: 330)

Name: NF11501_high_16
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11501_high_16
NF11501_high_16
[»] chr6 (10 HSPs)
chr6 (20-320)||(2368885-2369185)
chr6 (20-320)||(2363139-2363439)
chr6 (40-320)||(2351508-2351788)
chr6 (40-265)||(2340110-2340335)
chr6 (40-318)||(2307376-2307654)
chr6 (20-265)||(2261168-2261413)
chr6 (96-258)||(14711303-14711465)
chr6 (20-305)||(2357839-2358124)
chr6 (96-234)||(14753374-14753512)
chr6 (125-234)||(2297361-2297470)
[»] chr3 (1 HSPs)
chr3 (20-307)||(4305850-4306137)
[»] chr4 (1 HSPs)
chr4 (20-320)||(5804129-5804429)
[»] scaffold0408 (1 HSPs)
scaffold0408 (96-225)||(560-689)


Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 2369185 - 2368885
Alignment:
Q  20 atatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggc 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2369185 atatcaataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattccagggc 2369086  T
Q  120 aaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaa 219  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2369085 aaatccttctaccacctccaaatggtaatagctcaaaatgatgacctctaacatcaacgtctttatgggtagtaagaaaccgctctggtttgaattccaa 2368986  T
Q  220 tggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatatccacctaaactgcaattctct 319  Q
    ||||| |||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  2368985 tggatttgaccaaatatttggatcagtgtgaatctttctaagattcaaaattaaccgtgttccttttcttacatcatatccatctaaattgcaattctct 2368886  T
Q  320 g 320  Q
    |    
T  2368885 g 2368885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 2363439 - 2363139
Alignment:
Q  20 atatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggc 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||| || |    
T  2363439 atatcaataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggac 2363340  T
Q  120 aaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaa 219  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||| ||| ||||||||| | ||    
T  2363339 aaatccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaatatctttatgcgttgtaagaaacctctccggtttgaatactaa 2363240  T
Q  220 tggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatatccacctaaactgcaattctct 319  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||||||||    
T  2363239 tggatctgaccaaacattaggatcagtgtgaatcttccaaagattcaaaattaatcgtgttccatttcttacatcatatccacctaaattacaattctct 2363140  T
Q  320 g 320  Q
    |    
T  2363139 g 2363139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 320
Target Start/End: Complemental strand, 2351788 - 2351508
Alignment:
Q  40 tggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctcca 139  Q
    |||||||| ||| |||||||||||||||||||| || | ||| |||||||| |||||||| ||||| || ||| | || ||  | |||||||||| ||||    
T  2351788 tggatttaagatatcaaaggaatgcaaaaaacttgctagagtgaaatgcacaatttgaagtccaaaagatattgcaggacacttccttctaccacttcca 2351689  T
Q  140 aatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaatggatctgaccaaacatttg 239  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||||||| || ||||||||||  ||||||||||| || |||||||||||||||||| | |    
T  2351688 aatggtagtagttcaaaatgattacctctaacatcaacaactttatgagtggtaagaaacctttctggtttgaactctaatggatctgaccaaacactag 2351589  T
Q  240 gatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatatccacctaaactgcaattctctg 320  Q
    ||||||| |||||||||||||||||||  |||||||| ||||||||||| ||||  || ||||| | | ||||||||||||    
T  2351588 gatcagtttgaatcttccaaagatttagcattaaccgagttccttttctaacatggtaaccaccaatagtgcaattctctg 2351508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 40 - 265
Target Start/End: Complemental strand, 2340335 - 2340110
Alignment:
Q  40 tggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctcca 139  Q
    |||||||| ||| ||||||||||||||||||||||| |  || ||||||| ||||||||| ||||| || ||||| || ||  | |||||||||| ||||    
T  2340335 tggatttaagatatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtccaaacgatattccaggacatttccttctaccacttcca 2340236  T
Q  140 aatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaatggatctgaccaaacatttg 239  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| || |||| |||||  ||||||||||| || |||||||||| ||||||| | |    
T  2340235 aatggtaatagttcaaaatgattacctctaacatcaacagctttatgagtggtaaaaaacctttctggtttgaactctaatggatctggccaaacactag 2340136  T
Q  240 gatcagtgtgaatcttccaaagattt 265  Q
    |||| || ||||||||||||||||||    
T  2340135 gatctgtttgaatcttccaaagattt 2340110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 40 - 318
Target Start/End: Complemental strand, 2307654 - 2307376
Alignment:
Q  40 tggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctcca 139  Q
    |||||||| ||| ||||||||||||||||||||||| | | | ||||||| ||||||||| |||| ||| ||||| ||||| || |||||||||| ||||    
T  2307654 tggatttaagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatccttctaccacttcca 2307555  T
Q  140 aatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaatggatctgaccaaacatttg 239  Q
    ||||| |||||| |||||| | |||| |||||||||||||||||||| || |||||||| |  ||||||||||| || |||||||||| ||||| ||| |    
T  2307554 aatggcaatagcacaaaattactacccctaacatcaacatctttatgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatattag 2307455  T
Q  240 gatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatatccacctaaactgcaattctc 318  Q
    |||| |||| |||| |||||||||||   ||||| || ||||| ||| | |||| ||| || |||||| | ||||||||    
T  2307454 gatccgtgttaatcctccaaagatttgtgattaatcgagttccctttataacatgataacctcctaaagtacaattctc 2307376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 2261168 - 2261413
Alignment:
Q  20 atatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggc 119  Q
    ||||||| ||||||||| |||  |||||| ||||||||||| || |||||| |||||||||||||||| | ||| ||||| ||||| || |||||||| |    
T  2261168 atatcaacaggttcactagatccatttacaatttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaagatattcctggac 2261267  T
Q  120 aaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaa 219  Q
    | || |||||||||| |||||||||||| | ||||||||| | |||  |  ||||||||| ||| || || |||||||| |  ||||||||||| || ||    
T  2261268 atatccttctaccacttccaaatggtaacaactcaaaatgttgacccttggcatcaacatttttgtgagtggtaagaaatctttctggtttgaactctaa 2261367  T
Q  220 tggatctgaccaaacatttggatcagtgtgaatcttccaaagattt 265  Q
    |||||||| ||||| | ||||||| || ||||| ||||||||||||    
T  2261368 tggatctggccaaatacttggatcggtttgaattttccaaagattt 2261413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 14711303 - 14711465
Alignment:
Q  96 gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaag 195  Q
    ||||| |||| || ||||| || || || ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  14711303 gaagggcaaaggatattccaggacacatccttcttccacttccaaatggtaaaagctcaaaatgattacctctaacatcaacatctttatgagttgtaag 14711402  T
Q  196 aaaccgctctggtttgaattccaatggatctgaccaaacatttggatcagtgtgaatcttcca 258  Q
    ||| | ||| |||||||| ||||||||||| | ||||||| | |||||||| || ||||||||    
T  14711403 aaatctctcaggtttgaactccaatggatccggccaaacactaggatcagtttggatcttcca 14711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 2358124 - 2357839
Alignment:
Q  20 atatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggc 119  Q
    ||||||||||| ||||| |||| ||  | ||||||||| |||||||||||| |||||||| ||||||||| |||||  || ||||| || ||| | || |    
T  2358124 atatcaataggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatatttcaggac 2358025  T
Q  120 aaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaa 219  Q
    |||| |||||||||| |||||||||||| | |||||| |||   |||| |||||||||||||||||  ||  ||||||| |  |||||||| || |  ||    
T  2358024 aaatccttctaccacttccaaatggtaacaactcaaagtgacaccctcgaacatcaacatctttataagtgttaagaaatctttctggtttaaactttaa 2357925  T
Q  220 tggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatatccaccta 305  Q
    |||||| |||||||||||  | || || || || |||||||||||||| ||||  || ||||||||| | |||||||| |||||||    
T  2357924 tggatccgaccaaacattatggtctgtttggattttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta 2357839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 14753374 - 14753512
Alignment:
Q  96 gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaag 195  Q
    |||||||||| || ||||| || ||||| ||||| |||| |||||||||||| | ||||||||||| |||  ||||||||||||||||||| || |||||    
T  14753374 gaaggccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaag 14753473  T
Q  196 aaaccgctctggtttgaattccaatggatctgaccaaac 234  Q
    ||| | | | || ||||| ||||||||||| | ||||||    
T  14753474 aaatctcccaggcttgaactccaatggatccggccaaac 14753512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 2297470 - 2297361
Alignment:
Q  125 cttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaatggat 224  Q
    ||||| |||| ||||||||| || | ||||||||  | ||| | || |||||||||||| |  || ||||||||||  || ||||| ||||| |||||||    
T  2297470 cttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgttagtggtaagaaacctttcaggtttaaattctaatggat 2297371  T
Q  225 ctgaccaaac 234  Q
    ||||||||||    
T  2297370 ctgaccaaac 2297361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 4306137 - 4305850
Alignment:
Q  20 atatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggc 119  Q
    |||||||||||||||  |||||  |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||||| |    
T  4306137 atatcaataggttcagctgatgcctttgagatttcaaaggaatgcaaaaaactagccaaagataaatgcaccatttgaaggccataagatattcctggac 4306038  T
Q  120 aaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaa 219  Q
    |||| |||||||||| |||||||||||||| ||||||||||| |||  ||||||||||| ||||||| |||||||||||||| ||||||||||| || ||    
T  4306037 aaatccttctaccacttccaaatggtaataactcaaaatgatgacccttaacatcaacacctttatgagtagtaagaaaccgttctggtttgaactctaa 4305938  T
Q  220 tggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatatccacctaaa 307  Q
     || ||| ||||||| || |||||||| || |||||||| ||||| |  ||||  |  ||||||||| | |||||||| |||||||||    
T  4305937 aggttctaaccaaaccttaggatcagtatggatcttccatagattcatgattagtctagttccttttttgacatcataaccacctaaa 4305850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 5804129 - 5804429
Alignment:
Q  20 atatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggc 119  Q
    ||||||||| |||||  || |||||||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||||| |||||  | ||||| || |    
T  5804129 atatcaataagttcaggtgttggatttaagatatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaagtccaaaacatattccaggac 5804228  T
Q  120 aaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaagaaaccgctctggtttgaattccaa 219  Q
    |  | |||||||||| ||||||||||  ||| |||||||||||||| |||||||||| ||||||||| || ||||||||||  ||||| || || || ||    
T  5804229 atttccttctaccacttccaaatggttgtagttcaaaatgattacccctaacatcaatatctttatgagttgtaagaaacctttctggcttaaaatctaa 5804328  T
Q  220 tggatctgaccaaacatttggatcagtgtgaatcttccaaagatttaaaattaaccgtgttccttttcttacatcatatccacctaaactgcaattctct 319  Q
    ||||| || ||||||| |  |||| || || |||||||||||||||   ||||| || ||||||||| | |||| ||| ||||||||| |||||||||||    
T  5804329 tggatttggccaaacactaagatctgtttggatcttccaaagatttgtgattaatcgagttccttttgtaacatgataaccacctaaagtgcaattctct 5804428  T
Q  320 g 320  Q
    |    
T  5804429 g 5804429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 689 - 560
Alignment:
Q  96 gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaacatcaacatctttatgggtagtaag 195  Q
    |||||||||| || ||||| || ||||| ||||| |||| |||||||||||| | ||||||||||| |||  ||||||||||||||||||| || |||||    
T  689 gaaggccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaag 590  T
Q  196 aaaccgctctggtttgaattccaatggatc 225  Q
    ||| | | | || ||||| |||||||||||    
T  589 aaatctcccaggcttgaactccaatggatc 560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University