View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11501_high_18 (Length: 311)
Name: NF11501_high_18
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 34819022 - 34819302
Alignment:
| Q |
15 |
agacaagttgaggcattttgacattatccacatcatcaatgatatcttcttgcatcacctgcaaaattcagataaaatgtgtctagtatatagtgcacat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34819022 |
agacaagttgaggcattttgacattatccacatcatcaatgatatcttcttgcatcacctgcaaaattcagataaaatgtgtctagtatatagtgcacat |
34819121 |
T |
|
| Q |
115 |
ggcagaaatttagcacatatatagttgcagatgagcattgactaatttttgttgtcgcaaatttgtaatttgttgagcacactagaaactcaaattattg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34819122 |
ggcagaaatttagcacatatatagttgcagatgagcattgactaatttttgttgtcgcaaatttgtaatttgttgagcacactagaaactcaaattattg |
34819221 |
T |
|
| Q |
215 |
ctgacaggtacacttgttattcttcaaacgtgtttacatattgacaatgaagtgctattatacctcaatgactgatgaatg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34819222 |
ctgacaggtacacttgttattcttcaaacgtgtttacatattgacaatgaagtgctattatacctcaatgactgatgaatg |
34819302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University