View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_high_20 (Length: 288)
Name: NF11501_high_20
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 45512855 - 45512598
Alignment:
| Q |
11 |
cataggtgtattcctaatttttaaatccttgtcttctaatcactggtctcgtcaccttcctaattcatttttgccctcggtttaagcttttctccgtcac |
110 |
Q |
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| T |
45512855 |
cataggtgtattcctaatttttaaatccttgtcttctaatcactggtctcgtcaccttcctaattcatttttgccctcggtttaagcttttatccgtcac |
45512756 |
T |
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| Q |
111 |
atgtcgatgctctcttcattcccatggatcttgtttgtatgctttcaccaattatgttgctatattgatttctaccaacattcaaattttgatttaatta |
210 |
Q |
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| T |
45512755 |
atgtcgttgctctcttcattcccatggatcttgtttgtatgctttcaccaattatgttgctatattgatttctaccaacattcaaattttgatttaatta |
45512656 |
T |
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| Q |
211 |
acccaatgaaagatgatttaaattaagaaaataatatcaaagtaatggaattgatgat |
268 |
Q |
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| T |
45512655 |
acccaatgaaagatgatttaaattaagaaaataatatcaaagtaatggaattgatgat |
45512598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 262
Target Start/End: Original strand, 29264799 - 29264921
Alignment:
| Q |
139 |
tcttgtttgtatgctttcaccaattatgttgctatattgatttctaccaacattcaaattttgatttaattaacccaatgaaagatgatttaaattaaga |
238 |
Q |
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| T |
29264799 |
tcttgtttgtatgcttttacca-ttatgctgctaaattgatttctaacgaaagttaa-ttttgatttgattaacctaatgaaagataatttcaattaaga |
29264896 |
T |
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| Q |
239 |
aaataa-tatcaaagtaatggaatt |
262 |
Q |
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| T |
29264897 |
aaataagcatcaaagaaatggaatt |
29264921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 29108585 - 29108537
Alignment:
| Q |
196 |
attttgatttaattaacccaatgaaagatgatttaaattaagaaaataa |
244 |
Q |
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|||||||||| ||||||| |||||||||| |||| |||||||||||||| |
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| T |
29108585 |
attttgatttgattaacctaatgaaagataatttcaattaagaaaataa |
29108537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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