View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_high_8 (Length: 425)
Name: NF11501_high_8
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 5 - 410
Target Start/End: Complemental strand, 28810260 - 28809859
Alignment:
| Q |
5 |
ccaaaaatttaaatgatgttcaccgtttcttgttagtagctagaaagtgtattaagaatgaaccatattttattcaacaatatatagtagacctcttcat |
104 |
Q |
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| T |
28810260 |
ccaaaaatttaaatgatgttcaccgtttcttgttagtagctagaaagtgtattaagaatgaaccatattttattaaacaatatataatagacctcttcat |
28810161 |
T |
|
| Q |
105 |
tagcagactatattagtaattttaaaatcttaaggaattgctttaattatattggaccaacttactttcaaatatcacaaaaactctctacctctggctt |
204 |
Q |
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| T |
28810160 |
tagcagactatattagtaattttaaaatcttaaggaattgctttaattatattggaccaacttactttcaaatatcataaaaactct--acctctggctt |
28810063 |
T |
|
| Q |
205 |
taaatttattgtgattaaaattttgaacagttcttttgtttttcattttcaaaaatctcaaggctttgattcgaaataagaaacctagcaagttaggaaa |
304 |
Q |
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| T |
28810062 |
taaatttattgtgattaaaattttgaacagttcttttgtttttcattttcaaaaatctcaaggctttgatttgaaataagaaacctagcaagttgggaaa |
28809963 |
T |
|
| Q |
305 |
agagtttatgcacaaattaaaatggagtttgtaccataatttaatctgatgagtctgtttgaccacttgatggttggcttgtacttttgcaggcaagttc |
404 |
Q |
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| T |
28809962 |
agagtttatgcacaaattaaaatggagtttgtaccataatttaatctgatgagtctgtttgaccacttgatggttggcttgtac--ttgcaggcaagttc |
28809865 |
T |
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| Q |
405 |
tactga |
410 |
Q |
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|||||| |
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| T |
28809864 |
tactga |
28809859 |
T |
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