View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_low_1 (Length: 547)
Name: NF11501_low_1
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 30 - 525
Target Start/End: Original strand, 2367673 - 2368168
Alignment:
| Q |
30 |
gctatatatcaaaattagttaacaattaacacttaacacaacactatcacctaacaactgaacaatcaattgatctatcaaagtaaacacaacaattact |
129 |
Q |
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| T |
2367673 |
gctatatatcaaaattagttaacaattaacacttaacacaacactatcacctaacaactgaacaatcaattgatctatcaaagtaaacacaacaactact |
2367772 |
T |
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| Q |
130 |
aagcaattaaacaaatccaccattcaacaatttatttacttaataccaccattatcattccatcaaacaaaaatccccaaatcaatgacatcatcagctt |
229 |
Q |
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| T |
2367773 |
aagcaattaaacaaatccaccattcaacaatttatttacttaataccaccactatcattccatcaaacaaaaatccccaaatcaatgacatcatcagctt |
2367872 |
T |
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| Q |
230 |
tctataacaatgatacaaaaaggaataaactttaaagatccaatatcataatttcctaattctaagcaaaacccaacatcacaattacaaaaaactcccc |
329 |
Q |
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| T |
2367873 |
tctataacaatgatacaaaaaggaataaactttaaagacccaatatcataatttcctaattctaagcaaaacccaacatcacaattacaaaaaactcccc |
2367972 |
T |
|
| Q |
330 |
aaaactccaatacccaaattgatcaaatgaaaatattgtacctttttaccagatttgtcatgaaagaagactctataatcaagggtttgtggttcacctt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2367973 |
aaaactccaatacccaaattgatcaaatgaaaatattgtacctttttaccagatttgtcatgaaagaagactctataatcaagggtttgtggttcacctt |
2368072 |
T |
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| Q |
430 |
cctccttgacagaaacctcagggtaatagatagccttacaagtataagacctggtagttctagaagaaaccttgagattgttgagacgaagagcac |
525 |
Q |
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| T |
2368073 |
cctccttgacagaaacctcagggtaatagatagccttacaagtataagacctggtagttctagaagaaaccttgagattgttgagacgaagagcac |
2368168 |
T |
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