View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11501_low_10 (Length: 425)
Name: NF11501_low_10
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 12813655 - 12813259
Alignment:
| Q |
14 |
agggtatgtgctttaaaatttcatatcggatttttcagggcattttagcccgaccaaaaataaactcgctatccgttagggctaacatgtacgaaacatg |
113 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12813655 |
agggtatatgctttaaaatttcatctcggatttttcagggcattttagccccaccaaaaataaactcgctatccgttagggctaacatgtacgaaacatg |
12813556 |
T |
|
| Q |
114 |
agtaatctgtttggatgacatagctgaaaatactaaactaaattagtaacatctatgaagcactaaattagaacccgctacccattagggccatcgtgta |
213 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12813555 |
agtaacctgtttggatgacatagctaaaaatactaaactaaattagtaacatatatgaagcactaaattagaacccgctacccattagggccaacgtgta |
12813456 |
T |
|
| Q |
214 |
cgagacatgagtagcccatttgaatgacatagctaaagtactaaactaaattagtaacattcatgaaacgctaaattagtaacatt---gtaaacttcct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
12813455 |
cgagacatgagtagcccatttgaatgacatagctaaagtactaaactaaattagtaacattcatgaaacactaaattagtaacatttaagtaaacttcct |
12813356 |
T |
|
| Q |
311 |
ttaatcatttttgttaaacaaaatatgtggcacaaaaactagacttgttacttgtatactttttaattttgtataaaaaatgacttgtattgttattta |
409 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12813355 |
ttaatcatttttgtt--acaaaatacgtggcacaaaaactagacttgttacatgtatactttttaattttgtataaaaaatgacttgtattgttattta |
12813259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University