View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_low_13 (Length: 354)
Name: NF11501_low_13
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 54825002 - 54824791
Alignment:
| Q |
1 |
caacaactaagcaaaaatgtaatatgaaaaaattctgcattataataacctaacctgttgcatgctcacatcaatagaaacagaccgtgaaataaataga |
100 |
Q |
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| T |
54825002 |
caacaactaagcaaaaatgtaatatgaaaaaattctgcattataataacctaacctgttgcatgctcacatcaatagaaacagaccgtgaaataaataga |
54824903 |
T |
|
| Q |
101 |
tctgcaatacgcatgaataaccatgtcagatactaaaaaagaaccagttgacagaacaatagacagttactggatcagttacagagtgtcataccacact |
200 |
Q |
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| T |
54824902 |
tctgcaatacgcatgaataaccatgtcagatactaaaaaagaaccagttgacagaacaatagacagttactggatcagttacagagtgtcataccacact |
54824803 |
T |
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| Q |
201 |
tcaattttaata |
212 |
Q |
| |
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|||||||||||| |
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| T |
54824802 |
tcaattttaata |
54824791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 54824760 - 54824615
Alignment:
| Q |
209 |
aatatggaataacgagttcaaattttagcagaaaggtttagatgatcagatttaattgagaagttaacataaagaaaggactttcatcagcaccatcatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54824760 |
aatatggaataacgagttcaaattttagcagaaaggtttagatgatcagatttaattgagaagttaacataaagaaaggactttcatcagcaccatcatg |
54824661 |
T |
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| Q |
309 |
attacaagtttacaaccaattttactattttgtcctgcttatttga |
354 |
Q |
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| T |
54824660 |
attacaagtttacaaccaattttactattttgtcctgcttatttga |
54824615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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