View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11501_low_15 (Length: 339)

Name: NF11501_low_15
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11501_low_15
NF11501_low_15
[»] chr6 (2 HSPs)
chr6 (6-289)||(9373603-9373883)
chr6 (220-308)||(15689044-15689131)
[»] chr2 (6 HSPs)
chr2 (217-306)||(45033366-45033455)
chr2 (217-308)||(45035161-45035252)
chr2 (258-308)||(1015768-1015818)
chr2 (258-308)||(17308734-17308784)
chr2 (258-308)||(14007786-14007836)
chr2 (268-308)||(30191637-30191677)
[»] chr5 (7 HSPs)
chr5 (213-308)||(10410800-10410895)
chr5 (217-308)||(10412377-10412468)
chr5 (220-306)||(6742551-6742637)
chr5 (258-308)||(25725821-25725871)
chr5 (258-310)||(25502036-25502088)
chr5 (216-304)||(8081507-8081595)
chr5 (258-308)||(25506951-25507001)
[»] chr8 (3 HSPs)
chr8 (217-311)||(35673342-35673436)
chr8 (224-309)||(35674849-35674934)
chr8 (243-308)||(1175145-1175210)
[»] chr3 (5 HSPs)
chr3 (214-308)||(27682194-27682288)
chr3 (162-308)||(26667011-26667159)
chr3 (216-308)||(28133725-28133817)
chr3 (217-308)||(4602299-4602390)
chr3 (258-308)||(41874557-41874607)
[»] chr1 (2 HSPs)
chr1 (216-308)||(46679707-46679799)
chr1 (217-308)||(44782196-44782287)
[»] chr7 (2 HSPs)
chr7 (258-305)||(21464559-21464606)
chr7 (258-308)||(29924677-29924727)
[»] chr4 (2 HSPs)
chr4 (233-308)||(28395566-28395641)
chr4 (258-308)||(4847701-4847751)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 289
Target Start/End: Complemental strand, 9373883 - 9373603
Alignment:
Q  6 aagaagaggctttaaaaggctcgttatgtggagacattttgagaaaaatcacatgctactatatatatagacnnnnnnncgagcatgctgcttattatta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||       
T  9373883 aagaagaggctttaaaaggctcgttatgtggagacattttgagaaaaatcacatgctactatatatatagactttttttcgagcatgctgcttatta--- 9373787  T
Q  106 atatagtgagaataaactagagttagatgaggtaaactagggttaatcggttggttagttagttagacttaccgactcttataaataactctcacaatta 205  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  9373786 atatagtgagaataaactagagttagatgaggtaaattagggttaatcggttggttagttagttagacttaccgactcttataaataactcttacaattg 9373687  T
Q  206 tactctctcacatcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttga 289  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||    
T  9373686 tactctctcacatcttttattcatttatatctttgttatgactcctatagaaaattacacattctatctttccattgcatttga 9373603  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 15689044 - 15689131
Alignment:
Q  220 ttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    |||||||||||| ||||||||| |||||||| | | | ||||||||| |||||||||| ||||||||||| |||||| |||||||||||    
T  15689044 ttttattcatttctatctttgtgatgactct-agagagaattacacaatctatctttccattgcatttgacctagaatcatggaatcct 15689131  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 45033366 - 45033455
Alignment:
Q  217 atcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatc 306  Q
    |||||||||||||||  |||||||| ||||||| || | ||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  45033366 atcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatc 45033455  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 45035161 - 45035252
Alignment:
Q  217 atcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    |||||||||||||||  |||||||| ||||||| || | | || || ||| |||||||||| ||||||||||||||||||||||||||||||    
T  45035161 atcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatcct 45035252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 1015768 - 1015818
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  1015768 aattacacaatctatctttccattgcatttgatctagaaccatggaatcct 1015818  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 17308734 - 17308784
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  17308734 aattacacaatctatctttccattgcatttgatctagaacaatggaatcct 17308784  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 14007786 - 14007836
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||| ||| || ||||||| ||||||||||| ||||||||||||||||||    
T  14007786 aattagacaatccatctttccattgcatttgacctagaaccatggaatcct 14007836  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 30191637 - 30191677
Alignment:
Q  268 tctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    |||||||||  |||| |||||||||||||||||||||||||    
T  30191637 tctatcttttcattgtatttgatctagaaccatggaatcct 30191677  T

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Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 10410800 - 10410895
Alignment:
Q  213 tcacatcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    |||||||||||||||||||  |||||||  ||||||| || | | ||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  10410800 tcacatcttttattcatttgcatctttgggatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatcct 10410895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 10412377 - 10412468
Alignment:
Q  217 atcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    |||||||||||||||  |||||||| || | ||||| | ||||||||||| |||||||||| ||||||||||| ||| ||||||| ||||||    
T  10412377 atcttttattcatttgcatctttgtgataattcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatcct 10412468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 6742551 - 6742637
Alignment:
Q  220 ttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatc 306  Q
    ||||||| |||| ||||||||| ||||||| || | | || |||||| |||||||||| ||||||||||||||||||| ||||||||    
T  6742551 ttttatttatttctatctttgtgatgactcgtagagagaaatacacaatctatctttccattgcatttgatctagaactatggaatc 6742637  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 25725871 - 25725821
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  25725871 aattacacaatctatctttccattgcatttgatctagaaccatggaatcct 25725821  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 25502088 - 25502036
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcctct 310  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  25502088 aattacacaatctatatttccattgcatttgatctagaaccatggaatcctct 25502036  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 8081507 - 8081595
Alignment:
Q  216 catcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaa 304  Q
    |||||||||| || || | |||| || ||||||| || | | ||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  8081507 catcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaa 8081595  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 25507001 - 25506951
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||| | |||||||||| ||||||||||||||| ||||||||||||||    
T  25507001 aattacataatctatctttccattgcatttgatctaaaaccatggaatcct 25506951  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 35673436 - 35673342
Alignment:
Q  217 atcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcctcta 311  Q
    ||||||||||||||||||||| ||| |||| || || | | ||||| ||| |||||||||| |||||||||||  ||||||||||||||||||||    
T  35673436 atcttttattcatttatatctctgtgatgattcatagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcctcta 35673342  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 35674934 - 35674849
Alignment:
Q  224 attcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcctc 309  Q
    |||||||||||||||||| ||||||| || | | ||||||||| |||| ||||| |||||||||||  |||||||||| |||||||    
T  35674934 attcatttatatctttgtgatgactcctagagagaattacacaatctacctttccattgcatttgacttagaaccatgcaatcctc 35674849  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 1175145 - 1175210
Alignment:
Q  243 atgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||| || ||||||||||||| |||||||||  ||| ||||||| |||||||||| |||||||    
T  1175145 atgactcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcct 1175210  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 27682194 - 27682288
Alignment:
Q  214 cacatcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||||||||||||||  |||||||| ||||||| || | | || |||||| | || ||||| ||||||||||||||||||||||||||||||    
T  27682194 cacatcttttattcatttgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcct 27682288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 308
Target Start/End: Complemental strand, 26667159 - 26667011
Alignment:
Q  162 agttagttagacttaccgactcttataaataactctcacaattatactctct-cacatcttttattcattta-tatctttgttatgactcttataaaaaa 259  Q
    ||||||||||||| ||  || | |||||||||||||||| ||| |||  | | || |||||||||||||||  ||||||||| ||||||||||   | ||    
T  26667159 agttagttagactaactcacccctataaataactctcaccattgtaccattttcatatcttttattcattttctatctttgtgatgactcttagggagaa 26667060  T
Q  260 ttacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||| |||| ||||| || |||||||||||||||||||| ||||||    
T  26667059 ttacacaatctacctttccatcgcatttgatctagaaccatgaaatcct 26667011  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 28133725 - 28133817
Alignment:
Q  216 catcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||||||||| ||  |||||||| ||||||| || | | || |||||| | || ||||| ||||||||||||||||||||||||||||||    
T  28133725 catcttttattcaattgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcct 28133817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 4602299 - 4602390
Alignment:
Q  217 atcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    |||||||||| | ||  |||||||||||||||| || | | || || ||| | || ||||| ||||||||||||||||||||||||||||||    
T  4602299 atcttttatttaattgcatctttgttatgactcatagagagaactatacaatttacctttccattgcatttgatctagaaccatggaatcct 4602390  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 41874557 - 41874607
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||| | |||||||||| ||||||||||| ||||||||||||||||||    
T  41874557 aattacaaaatctatctttccattgcatttgacctagaaccatggaatcct 41874607  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 46679707 - 46679799
Alignment:
Q  216 catcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    |||||||||| || || | |||| || ||||||| || | | ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  46679707 catcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcct 46679799  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 44782287 - 44782196
Alignment:
Q  217 atcttttattcatttatatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||||| || || | |||| || ||||||| || | | ||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  44782287 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatcct 44782196  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 21464559 - 21464606
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaat 305  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  21464559 aattacacaatctatctttccattgcatttgatctagaaccatggaat 21464606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 29924677 - 29924727
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||||| |||||||||| ||||||||||| ||||||| ||||||||||    
T  29924677 aattacacaatctatctttccattgcatttgacctagaactatggaatcct 29924727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 28395641 - 28395566
Alignment:
Q  233 tatctttgttatgactcttataaaaaattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||||| ||||||| || | | ||||||||| |||||||||| ||||||||||| ||| ||||||||||||||    
T  28395641 tatctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatcct 28395566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 4847751 - 4847701
Alignment:
Q  258 aattacacattctatctttctattgcatttgatctagaaccatggaatcct 308  Q
    ||||||| | |||||||||| ||| ||||||| ||||||||||||||||||    
T  4847751 aattacaaaatctatctttccattacatttgacctagaaccatggaatcct 4847701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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