View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11501_low_22 (Length: 284)

Name: NF11501_low_22
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11501_low_22
NF11501_low_22
[»] chr3 (1 HSPs)
chr3 (1-267)||(9171575-9171841)
[»] chr1 (21 HSPs)
chr1 (3-265)||(9300168-9300430)
chr1 (9-267)||(9257286-9257544)
chr1 (1-261)||(9466503-9466763)
chr1 (1-265)||(9364471-9364735)
chr1 (1-262)||(8927028-8927289)
chr1 (1-265)||(9337612-9337876)
chr1 (3-265)||(9242311-9242573)
chr1 (1-262)||(8939454-8939715)
chr1 (1-262)||(8962381-8962642)
chr1 (1-211)||(9236177-9236387)
chr1 (93-259)||(9420547-9420713)
chr1 (6-259)||(9437543-9437796)
chr1 (1-211)||(9377846-9378056)
chr1 (1-197)||(9125148-9125344)
chr1 (159-265)||(9495352-9495458)
chr1 (200-265)||(11026285-11026350)
chr1 (200-265)||(11040988-11041053)
chr1 (183-265)||(10992829-10992911)
chr1 (33-87)||(11026463-11026517)
chr1 (9-85)||(10906922-10906998)
chr1 (9-85)||(10993009-10993085)
[»] scaffold0690 (1 HSPs)
scaffold0690 (3-262)||(1683-1942)
[»] chr6 (1 HSPs)
chr6 (3-262)||(15910164-15910423)
[»] chr4 (1 HSPs)
chr4 (117-241)||(27696131-27696255)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 9171841 - 9171575
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171841 cagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 9171742  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171741 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 9171642  T
Q  201 tgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaacttgt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171641 tgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaacttgt 9171575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 9300430 - 9300168
Alignment:
Q  3 gacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatttt 102  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||    
T  9300430 gacttataagagacattcccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctttggccgcggtcatagatatagtactttgatttt 9300331  T
Q  103 ttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctttg 202  Q
    | ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||    
T  9300330 tcgagcacatcttagccaaaccgaagtctgtaatttttggggttaaattgtcatcgatcaagacgttatgaggattgatgtcaaagtgaagaattctttg 9300231  T
Q  203 atcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaactt 265  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||    
T  9300230 atcacaaccttggtgaagatactctattccattggctatgcctagagcaatttgttgcaactt 9300168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 9257286 - 9257544
Alignment:
Q  9 taagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgattttttgagc 108  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  9257286 taagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctctcgctgcagtcatagatatagtactttgattttttgagc 9257385  T
Q  109 acaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctttgatcaca 208  Q
    ||| |||||||||||| || | ||||||||||||||| ||||||||||| |  ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  9257386 acatcttagccaaaccaaaatttgtaatttttggggttaaattgtcatcgatcaagacattatgaggattgatgtcaaagtgaagaattctttgatcaca 9257485  T
Q  209 accttggtgcagatactcaattccattggctattcctagagcaatttgttgcaacttgt 267  Q
    || |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  9257486 actttggtgaagatactcgattccattggctatgcctagagcaatttgttgcaacttgt 9257544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 9466503 - 9466763
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    |||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||| || |  |||||| ||||    
T  9466503 cagacttatatgagacattcccgaagtttctagaaaaaacttcgggtgccatgtagcctaacgttcctttggctgcggtcatagacactgtacttcgatt 9466602  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    ||| ||||||| ||||||||||||||||||||||||||| || |||||||| |||||||  ||||| ||||||||||| |||||||||||||||||||||    
T  9466603 tttcgagcacatcttagccaaaccgaagtctgtaattttgggagtgaaattctcatctaacaagacattatgaggattgatgtcaaagtgaagaattctt 9466702  T
Q  201 tgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgca 261  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  9466703 tgatcacaaccttggtgaagatactcaattccattggctatgcctagagcaatttgttgca 9466763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 9364735 - 9364471
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    ||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||  | ||||||||||| ||||   ||||||||||    
T  9364735 cagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatacgatactttgatt 9364636  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    |||||| || | ||| |||||||| || ||||||||||| || ||||||||||||||||  ||||| ||||||||||| ||||||||||| |||||||||    
T  9364635 ttttgaacatatcttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaattctt 9364536  T
Q  201 tgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaactt 265  Q
    ||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  9364535 tgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaactt 9364471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 8927289 - 8927028
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||| ||| || |||||    
T  8927289 cagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaacctaatgttcccctggctgcagtcatcgatacagtgctatgatt 8927190  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    ||| ||||||| ||| || ||||||||||| |  ||||||||  |||||||||||||||  ||||| || || ||||| || |||||||||||||||||     
T  8927189 tttagagcacagcttcgctaaaccgaagtccgatatttttggaatgaaattgtcatctaacaagacattgtggggattgatatcaaagtgaagaattcta 8927090  T
Q  201 tgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaa 262  Q
    ||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||    
T  8927089 tgatcacaaccttggtgaagatactcaatcccattggcaatgcctagagcaatttgttgcaa 8927028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 9337876 - 9337612
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    ||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||  | ||||||||||| ||||    |||||||||    
T  9337876 cagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatacgacactttgatt 9337777  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    |||||| || | ||| |||||||| || ||||||||||| || ||||||||||||||||  ||||| ||||||||||| ||||||||||| |||||||||    
T  9337776 ttttgaacatatcttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaattctt 9337677  T
Q  201 tgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaactt 265  Q
    ||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  9337676 tgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaactt 9337612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 9242311 - 9242573
Alignment:
Q  3 gacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatttt 102  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||  | || |||||||| |||| | ||||||||||||    
T  9242311 gacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctactgttcccttagccgcagtcatggatacaatactttgatttt 9242410  T
Q  103 ttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctttg 202  Q
    | || |||| ||| |||||||| || ||||||||||  ||  |||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||||    
T  9242411 tcgaacacatcttggccaaaccaaaatctgtaatttggggaatgaaattgtcatctaacaagacattattaggattgatgtcaaagtgtagaattctttg 9242510  T
Q  203 atcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaactt 265  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  9242511 atcacaaccttggtggagatactcaatgccattggctatacctagagcaattttttgcaactt 9242573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 8939715 - 8939454
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||  |||||||||||    
T  8939715 cagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtcattgatactgtactttgatt 8939616  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    ||| ||||||| |||||| |||||||||||||  ||||||||   |||||||||||||| ||| || ||||| ||||| || || ||||||||||||||     
T  8939615 tttggagcacagcttagctaaaccgaagtctgatatttttggaacgaaattgtcatctaataatacattatgtggattgatatcgaagtgaagaattcta 8939516  T
Q  201 tgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaa 262  Q
    |||||||| |||||||| ||||||||||| |||||||| || || |||||||||||||||||    
T  8939515 tgatcacagccttggtgaagatactcaatcccattggcaatgccaagagcaatttgttgcaa 8939454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 8962642 - 8962381
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    |||| |||||||| ||||||||||| |||| |||||| ||||| ||||||||||||||||||||||| || || |||||||| |||| | || |||||||    
T  8962642 cagatttataagagacattcccaaagtttcgagaaaatacttcaggtgccatgtatcctaatgttcccctagccgcagtcatcgatacaatagtttgatt 8962543  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    ||| ||||||||||| || ||||| |||||||  |||||||| || |||||||||||||  ||||  || || ||||| || ||||| ||||||||||||    
T  8962542 tttggagcacaacttggctaaaccaaagtctgatatttttggagtaaaattgtcatctaacaagatattgtgcggattgatatcaaaatgaagaattctt 8962443  T
Q  201 tgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaa 262  Q
    |||||||| || ||||| |||||||||||||||||||| || ||||||||||| ||||||||    
T  8962442 tgatcacagccctggtgaagatactcaattccattggcaatgcctagagcaatctgttgcaa 8962381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 9236177 - 9236387
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    ||||||||||||||||||| || || ||||| || |||||||| ||||| |||||||| || |||||||| ||||||||||| || |  || ||||| ||    
T  9236177 cagacttataagaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtt 9236276  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    ||| |  ||||| ||||| |  || ||||| || ||||| ||  | ||||| ||||||| ||| || || || ||||| || ||||||||||| |||||     
T  9236277 tttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattcta 9236376  T
Q  201 tgatcacaacc 211  Q
    |||||||||||    
T  9236377 tgatcacaacc 9236387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 9420547 - 9420713
Alignment:
Q  93 ctttgattttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaa 192  Q
    ||||||||||| |||||||| || |||||||| || || |||||||||||    || |||||||||| ||| |||||||  |||||||| || |||||||    
T  9420547 ctttgatttttagagcacaatttcgccaaaccaaaatcagtaatttttggaacaaacttgtcatctaataacacgttatagggattaatatcgaagtgaa 9420646  T
Q  193 gaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttg 259  Q
    |||||   ||||||||||    ||| ||||||||||| || |||||||| || ||||||||||||||    
T  9420647 gaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaagagcaatttgttg 9420713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 9437543 - 9437796
Alignment:
Q  6 ttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgattttttg 105  Q
    ||||| || ||||| ||||| || || ||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | ||| |   | ||||||||||| |    
T  9437543 ttatacgatacatttccaaagttcctcgaaaacacttcaggtgcaatgtaacctaaagtccctcttgcggcagttactgacactttgctttgatttttag 9437642  T
Q  106 agcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctttgatc 205  Q
    | ||||| || |||||||| || || |||||||||||    || |||||||||| ||  |||||||| |||||||| || ||||||||||||   |||||    
T  9437643 aacacaatttcgccaaaccaaaatcagtaatttttggaacaaacttgtcatctaatagcacgttatggggattaatatcgaagtgaagaatttgctgatc 9437742  T
Q  206 acaaccttggtgcagatactcaattccattggctattcctagagcaatttgttg 259  Q
    |||||    ||| ||||||||||| || |||||||| || ||||||||||||||    
T  9437743 acaactcatgtgaagatactcaatacctttggctatgccaagagcaatttgttg 9437796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 9378056 - 9377846
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    ||||||| ||||||||||| || || ||||| || |||||||| ||||| ||||| || ||||||||||| ||||| || || || |  |||||||||||    
T  9378056 cagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggtgcaatgtagcccaatgttcctctagctgcggttatagacaccgtactttgatt 9377957  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctt 200  Q
    ||| |  ||||  ||||| |  || ||||| |||||||| ||  | ||||| ||||||| ||| || || || ||||| || ||||||||||| |||||     
T  9377956 tttgggacacagtttagcaagtccaaagtcagtaattttaggactcaaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattcta 9377857  T
Q  201 tgatcacaacc 211  Q
    |||||||||||    
T  9377856 tgatcacaacc 9377846  T

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Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 9125148 - 9125344
Alignment:
Q  1 cagacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatt 100  Q
    ||||||||  ||||||||| ||||||||||  || |||||||| |||||||| ||||| || |||||||| || |||||||| |||| |  |||   |||    
T  9125148 cagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgccatatatcccaaggttcctctagccgcagtcatggatacaacactaacatt 9125247  T
Q  101 ttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaatt 197  Q
     ||||| || || || || |  || ||||||| ||||||||| |||||  |||||||||| || || || ||||| || ||||||||||||||||||    
T  9125248 ctttgaacataatttggcgagtccaaagtctgaaatttttggagtgaaggtgtcatctagcaaaacattgtgagggttgatgtcaaagtgaagaatt 9125344  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 9495458 - 9495352
Alignment:
Q  159 agtaagacgttatgaggattaatgtcaaagtgaagaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgtt 258  Q
    |||||||  |||||||| || || ||||||||||| || || || ||||| ||||| || |||||||||||||| || |||||||| || ||||||| ||    
T  9495458 agtaagatattatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttctt 9495359  T
Q  259 gcaactt 265  Q
    | |||||    
T  9495358 gtaactt 9495352  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 11026350 - 11026285
Alignment:
Q  200 ttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaactt 265  Q
    ||||||||||||||| || ||||| |||||||| || |||||||||| ||||||||  ||||||||    
T  11026350 ttgatcacaaccttgatgaagatattcaattcctttagctattcctaaagcaatttcgtgcaactt 11026285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 11041053 - 11040988
Alignment:
Q  200 ttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaactt 265  Q
    ||||||||||||||| || ||||| |||||||| || |||||||||| ||||||||  ||||||||    
T  11041053 ttgatcacaaccttgatgaagatattcaattcctttagctattcctaaagcaatttcgtgcaactt 11040988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 10992911 - 10992829
Alignment:
Q  183 tcaaagtgaagaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaactt 265  Q
    ||||| ||||| || | ||||||||||||||| || |||||||||| ||| || ||||| |||| ||||||||  ||||||||    
T  10992911 tcaaaatgaaggatgcgttgatcacaaccttgatgaagatactcaactcctttagctatacctaaagcaatttcatgcaactt 10992829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 11026517 - 11026463
Alignment:
Q  33 gaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgata 87  Q
    ||||||||||| || || ||||| || ||||||||||| ||||||||||||||||    
T  11026517 gaaaaaacttctggagcaatgtaccccaatgttcctctagctgcagtcattgata 11026463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 10906998 - 10906922
Alignment:
Q  9 taagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattga 85  Q
    ||||| ||||| ||||| || || ||||||||||| || || ||||| || ||||||||||| ||||| ||||||||    
T  10906998 taagacacatttccaaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctctagctgcggtcattga 10906922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 10993085 - 10993009
Alignment:
Q  9 taagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattga 85  Q
    ||||| ||||| ||||| || || ||||||||||| || || ||||| || ||||||||||| ||||| ||||||||    
T  10993085 taagacacatttccaaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctctagctgcggtcattga 10993009  T

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Target: scaffold0690 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 1942 - 1683
Alignment:
Q  3 gacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatttt 102  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||  | |||| |||||| |||| | ||||||||||||    
T  1942 gacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttcccttagctgtagtcatggatacattactttgatttt 1843  T
Q  103 ttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctttg 202  Q
    | || |||| |||||||||||| || ||||| ||||| || ||||||||||||||||| ||||  ||||||||||| ||||||||||| | |||||||||    
T  1842 tcgaacacatcttagccaaaccaaaatctgtgattttgggagtgaaattgtcatctagcaagatattatgaggattgatgtcaaagtgtaaaattctttg 1743  T
Q  203 atcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaa 262  Q
    ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  1742 atcacaaccttggtggagatactcaatgccattagctatgcctagagcaatttgttgcaa 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 3 - 262
Target Start/End: Original strand, 15910164 - 15910423
Alignment:
Q  3 gacttataagaaacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtcattgatatagtactttgatttt 102  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||  | ||| ||||||| |||| | ||||||||||||    
T  15910164 gacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttcccttagctacagtcatggatacattactttgatttt 15910263  T
Q  103 ttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctttg 202  Q
    | || |||| |||||||||||| || ||||| ||||| || ||||||||||||||||| ||||  ||||||||||| ||||||||||| | |||||||||    
T  15910264 tcgaacacatcttagccaaaccaaaatctgtgattttgggagtgaaattgtcatctagcaagatattatgaggattgatgtcaaagtgtaaaattctttg 15910363  T
Q  203 atcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaa 262  Q
    ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  15910364 atcacaaccttggtggagatactcaatgccattagctatgcctagagcaatttgttgcaa 15910423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 27696255 - 27696131
Alignment:
Q  117 gccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctttgatcacaaccttggt 216  Q
    |||||||| || || | |||||| || ||||||||||| ||||| || ||||||||||| || || ||||| || ||||||| || |||||||||||| |    
T  27696255 gccaaaccaaaatcagaaattttgggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgat 27696156  T
Q  217 gcagatactcaattccattggctat 241  Q
    | |||||||||||||| || |||||    
T  27696155 gaagatactcaattcccttcgctat 27696131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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