View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_low_26 (Length: 266)
Name: NF11501_low_26
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 44314352 - 44314584
Alignment:
| Q |
18 |
gttgtgaccttctactgcttgctggaaattgcttattagaaaccaatttttccttcataggttccttctcagaataatcagaatctgaaagatccttatc |
117 |
Q |
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| T |
44314352 |
gttgtgaccttctactgcttgctggaaattgcttattagaaaccaatttttccttcataggttccttctcag---------aatctgaaagatccttatc |
44314442 |
T |
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| Q |
118 |
cttccttgattttctagtagtagaagctccaactccaagggtcctttgtgcaatagagaaagaggataaccttatgacatttactacaaccttcattgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314443 |
cttccttgattttctagtagtagaagctccaactccaagggtcctttgtgcaatagagaaagaggataaccttatgacatttactacaaccttcattgat |
44314542 |
T |
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| Q |
218 |
ttctcacaaagagattcctcattcttggactttcctatgcta |
259 |
Q |
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| T |
44314543 |
ttctcacaaagagattcctcattcttggactttcctatgcta |
44314584 |
T |
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