View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_low_27 (Length: 242)
Name: NF11501_low_27
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 44721555 - 44721761
Alignment:
| Q |
15 |
gagaagaagatgattaaatgtacaaaaggagttagcttgcactagaagttggcaagcctaatttggaatagggtatataatatgacccttcagttttaac |
114 |
Q |
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| T |
44721555 |
gagaagaagatgattaaatgtacaaaaggagttagcttgcactagaagttggcaagcgtaatttggaatagggtatataatatgacccttcagttttaac |
44721654 |
T |
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| Q |
115 |
gccaccctttattgaataaatgaatgcagccaggaagtaattaacttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaactg |
214 |
Q |
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| T |
44721655 |
gccaccctttattgaataaatgaatgcagccaggaagtaattaacttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaactg |
44721754 |
T |
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| Q |
215 |
aagctta |
221 |
Q |
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||||||| |
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| T |
44721755 |
aagctta |
44721761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 38673198 - 38673267
Alignment:
| Q |
22 |
agatgattaaatgtacaaaaggagttagcttgcactagaagttggcaagcctaatttggaatagggtata |
91 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| || |||| | ||||| ||||||||||||| |
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| T |
38673198 |
agatgattaaatgtacaaaaggagttagcttgtactagaactttgcaaacataattaggaatagggtata |
38673267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 38673359 - 38673411
Alignment:
| Q |
160 |
ttgagaaagttatcagatacttcagcaaaaacatgacgataaacggataaaac |
212 |
Q |
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||||||| ||||| ||| |||||||||||||| ||||||||||||||||||| |
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| T |
38673359 |
ttgagaacattatccgatgcttcagcaaaaacaagacgataaacggataaaac |
38673411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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