View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11501_low_3 (Length: 524)

Name: NF11501_low_3
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11501_low_3
NF11501_low_3
[»] chr7 (32 HSPs)
chr7 (297-404)||(48705644-48705750)
chr7 (440-514)||(44333147-44333221)
chr7 (440-510)||(48646057-48646127)
chr7 (442-514)||(10899114-10899186)
chr7 (440-514)||(35727707-35727781)
chr7 (310-395)||(33474361-33474445)
chr7 (440-514)||(7258283-7258357)
chr7 (440-510)||(43457465-43457535)
chr7 (444-514)||(8374926-8374996)
chr7 (440-514)||(46286511-46286585)
chr7 (440-513)||(48647485-48647558)
chr7 (440-502)||(21062825-21062887)
chr7 (440-514)||(30925049-30925123)
chr7 (440-514)||(48788713-48788787)
chr7 (440-507)||(48777264-48777331)
chr7 (440-514)||(8375624-8375698)
chr7 (440-510)||(12223744-12223814)
chr7 (440-514)||(34704917-34704991)
chr7 (440-510)||(35729131-35729201)
chr7 (448-510)||(42477397-42477459)
chr7 (440-510)||(44334494-44334564)
chr7 (440-509)||(45583692-45583761)
chr7 (472-512)||(44529068-44529108)
chr7 (461-510)||(13578365-13578414)
chr7 (452-512)||(8048827-8048887)
chr7 (440-503)||(5930184-5930247)
chr7 (464-510)||(7259729-7259775)
chr7 (467-513)||(10894385-10894431)
chr7 (429-504)||(24934799-24934876)
chr7 (440-510)||(39708111-39708181)
chr7 (359-431)||(5082481-5082552)
chr7 (452-504)||(24844593-24844645)
[»] chr3 (41 HSPs)
chr3 (293-405)||(21814202-21814312)
chr3 (293-393)||(15502622-15502721)
chr3 (293-392)||(41998907-41999005)
chr3 (311-389)||(1165784-1165861)
chr3 (440-510)||(52318362-52318432)
chr3 (440-514)||(2591635-2591709)
chr3 (440-510)||(2592052-2592122)
chr3 (311-393)||(15005830-15005911)
chr3 (440-514)||(48572993-48573067)
chr3 (308-405)||(3084012-3084107)
chr3 (293-392)||(34060751-34060850)
chr3 (464-514)||(11773092-11773142)
chr3 (440-510)||(17700526-17700596)
chr3 (441-507)||(19331117-19331183)
chr3 (440-510)||(33428480-33428550)
chr3 (440-514)||(34263813-34263887)
chr3 (440-514)||(36278960-36279034)
chr3 (440-510)||(45600983-45601053)
chr3 (440-509)||(55388081-55388150)
chr3 (440-510)||(17701964-17702034)
chr3 (440-510)||(19114541-19114611)
chr3 (440-514)||(47118092-47118166)
chr3 (440-511)||(52316987-52317058)
chr3 (440-510)||(19115191-19115261)
chr3 (440-514)||(50753825-50753899)
chr3 (441-510)||(20464078-20464147)
chr3 (446-509)||(48808380-48808443)
chr3 (311-393)||(21195283-21195364)
chr3 (440-498)||(47428614-47428672)
chr3 (440-510)||(55389514-55389584)
chr3 (457-510)||(47427885-47427938)
chr3 (440-524)||(3671047-3671130)
chr3 (440-504)||(47075402-47075466)
chr3 (471-514)||(36280358-36280401)
chr3 (469-504)||(49261585-49261620)
chr3 (440-511)||(53957683-53957753)
chr3 (323-390)||(54143822-54143889)
chr3 (334-388)||(22455369-22455423)
chr3 (480-510)||(48574504-48574534)
chr3 (346-395)||(28954253-28954302)
chr3 (468-509)||(53959146-53959187)
[»] scaffold0045 (2 HSPs)
scaffold0045 (312-393)||(62583-62663)
scaffold0045 (312-393)||(69915-69995)
[»] chr8 (26 HSPs)
chr8 (311-404)||(43819551-43819643)
chr8 (313-431)||(7207194-7207310)
chr8 (293-395)||(24066973-24067074)
chr8 (440-510)||(32898490-32898560)
chr8 (440-524)||(35178835-35178919)
chr8 (293-387)||(617525-617617)
chr8 (293-387)||(623918-624010)
chr8 (293-395)||(42542994-42543095)
chr8 (444-510)||(35177407-35177473)
chr8 (440-510)||(41754006-41754076)
chr8 (459-509)||(41754841-41754891)
chr8 (293-380)||(589913-589998)
chr8 (448-504)||(28005359-28005415)
chr8 (448-504)||(28062662-28062718)
chr8 (440-511)||(1953014-1953084)
chr8 (443-510)||(33314872-33314939)
chr8 (357-403)||(12221022-12221068)
chr8 (430-504)||(59548-59624)
chr8 (440-509)||(30134574-30134643)
chr8 (293-393)||(27737704-27737803)
chr8 (459-514)||(1951970-1952024)
chr8 (354-393)||(8210174-8210213)
chr8 (346-392)||(4308834-4308880)
chr8 (461-511)||(5965486-5965536)
chr8 (440-510)||(10407629-10407699)
chr8 (440-509)||(5738069-5738138)
[»] chr1 (28 HSPs)
chr1 (311-395)||(51046645-51046728)
chr1 (448-514)||(7945595-7945661)
chr1 (324-393)||(32268033-32268102)
chr1 (444-514)||(5782426-5782496)
chr1 (313-405)||(13925101-13925191)
chr1 (440-511)||(32665814-32665885)
chr1 (440-510)||(10332994-10333064)
chr1 (452-514)||(52440600-52440662)
chr1 (310-387)||(1107386-1107462)
chr1 (440-513)||(52439487-52439560)
chr1 (446-510)||(7944169-7944233)
chr1 (443-507)||(9339657-9339721)
chr1 (471-514)||(9341066-9341109)
chr1 (293-387)||(39421026-39421126)
chr1 (440-514)||(6612427-6612501)
chr1 (440-513)||(22856688-22856761)
chr1 (357-405)||(12173173-12173221)
chr1 (459-510)||(5783154-5783205)
chr1 (459-514)||(10333227-10333282)
chr1 (357-431)||(46289632-46289705)
chr1 (325-385)||(3894800-3894861)
chr1 (442-514)||(1001164-1001236)
chr1 (483-514)||(6614020-6614051)
chr1 (293-360)||(46289579-46289645)
chr1 (347-393)||(27210749-27210795)
chr1 (330-392)||(41898878-41898940)
chr1 (440-500)||(8975167-8975227)
chr1 (440-504)||(11060835-11060899)
[»] chr6 (10 HSPs)
chr6 (293-405)||(1947417-1947528)
chr6 (293-404)||(16441775-16441885)
chr6 (440-514)||(30748007-30748081)
chr6 (324-387)||(19646027-19646090)
chr6 (440-509)||(31218963-31219032)
chr6 (440-509)||(31219206-31219275)
chr6 (324-387)||(5138503-5138565)
chr6 (293-387)||(27127493-27127586)
chr6 (465-514)||(6468822-6468871)
chr6 (440-504)||(23507957-23508020)
[»] chr2 (29 HSPs)
chr2 (440-514)||(24459487-24459561)
chr2 (440-510)||(31091572-31091642)
chr2 (440-510)||(32766284-32766354)
chr2 (440-513)||(40000376-40000449)
chr2 (324-395)||(7888572-7888643)
chr2 (440-511)||(39015013-39015084)
chr2 (440-514)||(2910108-2910182)
chr2 (311-387)||(10824259-10824334)
chr2 (443-514)||(17330271-17330342)
chr2 (444-514)||(31090176-31090246)
chr2 (293-385)||(803889-803980)
chr2 (440-514)||(24458068-24458142)
chr2 (440-511)||(34037717-34037788)
chr2 (440-510)||(32764946-32765016)
chr2 (453-514)||(17466869-17466930)
chr2 (440-510)||(39016424-39016496)
chr2 (349-395)||(445602-445648)
chr2 (440-510)||(5915037-5915107)
chr2 (463-504)||(15442022-15442063)
chr2 (311-395)||(6975837-6975919)
chr2 (474-510)||(14704048-14704084)
chr2 (429-498)||(14887555-14887626)
chr2 (440-514)||(21733812-21733889)
chr2 (346-392)||(33726405-33726451)
chr2 (347-392)||(2239607-2239652)
chr2 (426-504)||(12746252-12746332)
chr2 (468-524)||(7073675-7073731)
chr2 (462-510)||(7412122-7412170)
chr2 (440-504)||(34582721-34582785)
[»] scaffold0169 (1 HSPs)
scaffold0169 (325-393)||(9025-9093)
[»] chr5 (25 HSPs)
chr5 (440-507)||(28591162-28591229)
chr5 (440-510)||(8074459-8074529)
chr5 (452-524)||(25590451-25590522)
chr5 (440-514)||(9538090-9538164)
chr5 (440-502)||(13651173-13651234)
chr5 (440-510)||(18400198-18400268)
chr5 (440-510)||(21069297-21069367)
chr5 (453-509)||(19182971-19183027)
chr5 (440-510)||(546081-546150)
chr5 (440-510)||(4592869-4592939)
chr5 (442-510)||(9537033-9537101)
chr5 (440-510)||(2464677-2464747)
chr5 (440-514)||(16611736-16611810)
chr5 (440-502)||(40612712-40612774)
chr5 (453-524)||(8075864-8075935)
chr5 (440-499)||(14891199-14891258)
chr5 (328-395)||(28782706-28782773)
chr5 (440-510)||(2466819-2466889)
chr5 (478-510)||(4594144-4594176)
chr5 (324-380)||(10317259-10317315)
chr5 (470-514)||(19186261-19186305)
chr5 (451-510)||(544668-544726)
chr5 (459-510)||(32640315-32640366)
chr5 (440-510)||(16979000-16979070)
chr5 (440-477)||(24900410-24900447)
[»] chr4 (21 HSPs)
chr4 (310-405)||(4867772-4867866)
chr4 (440-510)||(31844730-31844800)
chr4 (310-395)||(45674164-45674248)
chr4 (440-504)||(53771100-53771164)
chr4 (429-524)||(47874559-47874656)
chr4 (440-510)||(47878529-47878599)
chr4 (440-509)||(42278057-42278126)
chr4 (429-510)||(42391933-42392016)
chr4 (440-511)||(53770341-53770412)
chr4 (459-509)||(54574452-54574502)
chr4 (338-395)||(45683989-45684046)
chr4 (440-511)||(4703261-4703332)
chr4 (442-509)||(39868932-39868999)
chr4 (440-514)||(19051272-19051346)
chr4 (440-514)||(26172983-26173057)
chr4 (440-510)||(48740065-48740135)
chr4 (444-484)||(26685488-26685528)
chr4 (293-379)||(29722067-29722152)
chr4 (357-431)||(35911151-35911224)
chr4 (444-510)||(44158516-44158582)
chr4 (312-393)||(45257608-45257688)
[»] scaffold0209 (1 HSPs)
scaffold0209 (293-387)||(29349-29441)
[»] scaffold0034 (1 HSPs)
scaffold0034 (440-510)||(116063-116133)
[»] scaffold0039 (3 HSPs)
scaffold0039 (444-510)||(74358-74424)
scaffold0039 (444-510)||(79085-79151)
scaffold0039 (440-511)||(79727-79798)
[»] scaffold0016 (1 HSPs)
scaffold0016 (429-504)||(36574-36650)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 297 - 404
Target Start/End: Complemental strand, 48705750 - 48705644
Alignment:
Q  297 gagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagta 396  Q
    ||||| |||| | |||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  48705750 gagtggccttggggcattgtttaagag-aacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaaagttaaaaagtt 48705652  T
Q  397 ataatttc 404  Q
     |||||||    
T  48705651 gtaatttc 48705644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 44333147 - 44333221
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  44333147 tcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctg 44333221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 48646057 - 48646127
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48646057 tcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 48646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 10899186 - 10899114
Alignment:
Q  442 actttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  10899186 actttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctg 10899114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 35727707 - 35727781
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  35727707 tcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctg 35727781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 33474445 - 33474361
Alignment:
Q  310 gcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||  |||||| |||||||||||||||||||||||| |||||||    
T  33474445 gcattggttaagag-aacaaaaatagaaataatttgttgaaaaattatgaaaagtgttgaattcaactttctaaaagtcaaaaagt 33474361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 7258283 - 7258357
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||| |||||||||| | ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||    
T  7258283 tcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctg 7258357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 43457465 - 43457535
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||| | |||| ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  43457465 tcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtc 43457535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 8374926 - 8374996
Alignment:
Q  444 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||| |||| ||||    
T  8374926 tttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctg 8374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 46286511 - 46286585
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||||||| | || |||||||| | | || |||||||||||||||||||||||||||||||||||    
T  46286511 tcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctg 46286585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 48647558 - 48647485
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctct 513  Q
    ||||||||| |||||| | | || |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  48647558 tcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctct 48647485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 21062825 - 21062887
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaataca 502  Q
    |||||||||||||||||| ||||||||||||||| | || ||| |||||||||||||||||||    
T  21062825 tcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaataca 21062887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 30925123 - 30925049
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||| ||||||| | |||| ||| | ||||||||| ||| |||||||||||||||||||||||||||||||    
T  30925123 tcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctg 30925049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 48788787 - 48788713
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||  ||| ||||| |||||||||||||||||||| |||||||||||  |||||||| |||||||||||||    
T  48788787 tcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctg 48788713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 48777264 - 48777331
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataa 507  Q
    ||||||||||| |||| | |||| ||||||||||||||  ||||||||||| ||||||||||||||||    
T  48777264 tcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataa 48777331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 8375698 - 8375624
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||| |||||||||||||  ||||| | ||||||||||| ||||||||||| ||||||||||||| |||| ||||    
T  8375698 tcacattagtccctgacttcgcaccgcactgtcacataggtccctgactcatgattaaatacaaagaagtttctg 8375624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 12223814 - 12223744
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||  ||||| ||  |||||||||| ||||||||||||||||||||| ||| |||||    
T  12223814 tcactttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtc 12223744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 34704917 - 34704991
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||||||| | |||| ||||||||| ||||||| ||  | |||||||||||||||||||||| |||||||||    
T  34704917 tcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctg 34704991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 35729201 - 35729131
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||| ||||||| | |||| ||||||||||||||| ||| ||||| ||||||| |||||||||||||    
T  35729201 tcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtc 35729131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 42477397 - 42477459
Alignment:
Q  448 gtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||| ||||| ||||||||| |||| ||||| || ||||||||||||||||||||||||||||    
T  42477397 gtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc 42477459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 44334564 - 44334494
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||| ||||| | |||| |||||||| |||||| ||||||||||| ||||||||| |||||||||    
T  44334564 tcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtc 44334494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 45583692 - 45583761
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||||||||||||||| | ||||  ||||| |||||||| |||||||||||| |||||||||| ||||||    
T  45583692 tcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagt 45583761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 512
Target Start/End: Original strand, 44529068 - 44529108
Alignment:
Q  472 cacatagatccctgactcaggattaaatacaaataagtctc 512  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  44529068 cacatagatccctgactcatgattaaatacaaataagtctc 44529108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 13578414 - 13578365
Alignment:
Q  461 cacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||||| | ||||| ||||||||| ||||||||||||||||||    
T  13578414 cacctcgctgtcataaagatcactgactcagaattaaatacaaataagtc 13578365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 8048887 - 8048827
Alignment:
Q  452 ctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctc 512  Q
    |||||| |||||||||||| |||| || || |||||||| ||||||||||||| |||||||    
T  8048887 ctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctc 8048827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 503
Target Start/End: Complemental strand, 5930247 - 5930184
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaa 503  Q
    ||||||||||| || ||| ||||| ||||| ||||| || ||||| ||||||||||||||||||    
T  5930247 tcactttagtctcttactttgcacttcgctatcacaaaggtccctaactcaggattaaatacaa 5930184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 510
Target Start/End: Complemental strand, 7259775 - 7259729
Alignment:
Q  464 ctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||||| | || |||| |||||||||||||||||||||||    
T  7259775 ctcgctgtcacatgggtctctgattcaggattaaatacaaataagtc 7259729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 513
Target Start/End: Original strand, 10894385 - 10894431
Alignment:
Q  467 gctgtcacatagatccctgactcaggattaaatacaaataagtctct 513  Q
    ||||| |||||| ||||||||||| ||||||||| ||||||||||||    
T  10894385 gctgttacataggtccctgactcaagattaaatataaataagtctct 10894431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 504
Target Start/End: Original strand, 24934799 - 24934876
Alignment:
Q  429 tttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||||||||||  ||||||| |||||| ||| ||||  ||||||||||| || || |||||| |||||||||||||||    
T  24934799 tttgagtaaatggtcactttggtccctaactctgcatatcgctgtcacaaaggtctctgacttaggattaaatacaaa 24934876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 39708111 - 39708181
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||| |||||| || ||||||| |||||| || ||| ||||||| |||| |||||||| |||||    
T  39708111 tcactttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtc 39708181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 5082552 - 5082481
Alignment:
Q  359 aaaaatgttgaattcaactttctaaaagttaaaaagtaataatttccgggtgcaaaattattacttttagttt 431  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||   ||||||| || ||||||||||||    
T  5082552 aaaagtgttgaattcaactttttaaaagtcaaaaagttgtaatttcc-aatgcaaaactactacttttagttt 5082481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 504
Target Start/End: Original strand, 24844593 - 24844645
Alignment:
Q  452 ctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||||| ||||||||||||||||  || ||| | |||||||||||||||||||    
T  24844593 ctgactctgcacctcgctgtcaccaaggtccataactcaggattaaatacaaa 24844645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 405
Target Start/End: Complemental strand, 21814312 - 21814202
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    ||||||||||| |||| |||||||||||||  |||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||| ||||    
T  21814312 taaagagtgtc-tttgggcattggttaagat-aacataaatagaaataatttgttgaaaagtggtgaaaagtgttgaattcaattttctaaaagtcaaaa 21814215  T
Q  393 agtaataatttcc 405  Q
    ||| |||||||||    
T  21814214 agttataatttcc 21814202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 293 - 393
Target Start/End: Original strand, 15502622 - 15502721
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    ||||||||||||||    ||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  15502622 taaagagtgtccttgagacattggttaagag-aacaaaaatagaaataatttgttgaaaaatggtaaaaaatgttgaattcaactttttaaaagttaaaa 15502720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 293 - 392
Target Start/End: Complemental strand, 41999005 - 41998907
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    ||||||||| |||| |  ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  41999005 taaagagtgcccttgggacattggttaagag-aacataaatagaaataatttgttgaaaaatggtgaaaagtgttaaattcaactttataaaagtaaaaa 41998907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 1165861 - 1165784
Alignment:
Q  311 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagtta 389  Q
    ||||||||| ||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  1165861 cattggttatgag-aacataaatagaaataatttgttgaaaagtgatgaaaaatgttgaattcaactttctaaaagtta 1165784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 52318432 - 52318362
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52318432 tcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtc 52318362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 2591635 - 2591709
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||||| | |||| || |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2591635 tcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctg 2591709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 2592122 - 2592052
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||| | | |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2592122 tcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 2592052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 15005911 - 15005830
Alignment:
Q  311 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    ||||||||||||| |||||||| ||||||||||| | |||||||||| |||| |||||||||||||||| |||||||||||||    
T  15005911 cattggttaagag-aacataaacagaaataatttatggaaaaatggtaaaaagtgttgaattcaactttgtaaaagttaaaaa 15005830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 48572993 - 48573067
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||| |||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||    
T  48572993 tcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctg 48573067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 3084107 - 3084012
Alignment:
Q  308 gtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttcc 405  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||||||| |||| |||||| || |||||||||||| |||||||||  ||||||||    
T  3084107 gtgcattggttaagag-aacataaatagatataatttgttgaaaaatggtaaaaagtgttgagtttaactttctaaaa-ttaaaaagttgtaatttcc 3084012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 392
Target Start/End: Original strand, 34060751 - 34060850
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    |||||||||||||| ||||||||||||||| ||  | ||||| ||||| | | ||||||||||||||||| || |||||| |||||| ||||||||||||    
T  34060751 taaagagtgtccttggtgcattggttaagaagataaaaaataaaaatattgtattgaaaaatggtgaaaagtgatgaatttaactttttaaaagttaaaa 34060850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 464 - 514
Target Start/End: Complemental strand, 11773142 - 11773092
Alignment:
Q  464 ctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctg 11773092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 17700526 - 17700596
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||  ||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||    
T  17700526 tcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtc 17700596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 441 - 507
Target Start/End: Original strand, 19331117 - 19331183
Alignment:
Q  441 cactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataa 507  Q
    |||||| || ||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  19331117 cactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 33428550 - 33428480
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||| |||||||||| ||||||||| |||||||||| |||||||||||| |||||||||||| |||||    
T  33428550 tcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtc 33428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 34263813 - 34263887
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||| | |||||||| ||||||||||||||||| || ||| ||| |||||||||||||||||||||||||||    
T  34263813 tcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctg 34263887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 36278960 - 36279034
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||||| | | || |||| |||||||||| ||||||| |||||||||||||||||||||||||||    
T  36278960 tcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctg 36279034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 45601053 - 45600983
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||| ||  |||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  45601053 tcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtc 45600983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 55388081 - 55388150
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||||||||||||||| | |||| |||||||||| |||| || |||||||||||||||||||||||||||    
T  55388081 tcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagt 55388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 17702034 - 17701964
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||| |||| | |||| |||||||||| |||| ||||||||||| |||||||||||||||||||    
T  17702034 tcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtc 17701964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 19114541 - 19114611
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||| ||||| ||| ||||||| || ||||||||||| ||||||||||||| |||||    
T  19114541 tcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtc 19114611  T

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Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 47118166 - 47118092
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||||||| ||||||||| ||||| |||  |||| ||||||||||||||| |||| |||||||||    
T  47118166 tcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctg 47118092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 52316987 - 52317058
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    ||||||||||| |||| | |||| |||||||||| |||| || |||||||| ||||||||||||||||||||    
T  52316987 tcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtct 52317058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 19115261 - 19115191
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||| | ||||| ||||||||| |||||||||| ||| | ||||||||||||||||||| |||||    
T  19115261 tcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtc 19115191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 50753825 - 50753899
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||||||||||  || |||||||||||||||||||| ||||| | ||||||||||||| ||| |||| ||||    
T  50753825 tcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctg 50753899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 510
Target Start/End: Original strand, 20464078 - 20464147
Alignment:
Q  441 cactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||| |||| ||||||||| ||||||| || |||||| |||| ||||||||||||| |||||    
T  20464078 cactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtc 20464147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 509
Target Start/End: Original strand, 48808380 - 48808443
Alignment:
Q  446 tagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||||||||| | |||| |||||||| | |||| || |||||||||||||||||||||||||||    
T  48808380 tagtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagt 48808443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 21195283 - 21195364
Alignment:
Q  311 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    |||||||||| ||||||| |||||||||||  || ||| ||| || |||||| || ||||||||||||| |||||||||||||    
T  21195283 cattggttaa-aggaacaaaaatagaaatatcttgttggaaagtgatgaaaagtggtgaattcaactttttaaaagttaaaaa 21195364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 47428672 - 47428614
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaa 498  Q
    |||||||| ||||||||| |||||||| ||||||||||| ||| ||||||| |||||||    
T  47428672 tcactttaatccctgactttgcacctctctgtcacataggtccgtgactcaagattaaa 47428614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 55389584 - 55389514
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||| |||||| ||| |||||||||||||||||||| ||  |||||||  ||||||||||| ||||||    
T  55389584 tcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtc 55389514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 47427885 - 47427938
Alignment:
Q  457 tgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||||||| ||| |||||||  |||||||||||| |||||    
T  47427885 tgtgcacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtc 47427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 524
Target Start/End: Original strand, 3671047 - 3671130
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctgcttctccact 524  Q
    |||||||| ||| ||||| |||||||| || ||||| || || ||||||||| ||||||||||||||||||| ||  ||||||||    
T  3671047 tcacttta-tccttgactttgcacctctctatcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccact 3671130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 47075466 - 47075402
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||||||| ||| ||||| ||||||||| |||||||||| ||| | ||||| |||||||||||||    
T  47075466 tcactttaatccttgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaa 47075402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 36280401 - 36280358
Alignment:
Q  471 tcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||| || |||||||||||||||||| |||||||||||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctg 36280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 504
Target Start/End: Complemental strand, 49261620 - 49261585
Alignment:
Q  469 tgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||||||||| |||||||||||||||||||||||||    
T  49261620 tgtcacataggtccctgactcaggattaaatacaaa 49261585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 53957683 - 53957753
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    |||||||||| | ||| | |||| |||||||| |||||| | |||||||||||| |||||||||||||||||    
T  53957683 tcactttagtacttgattctgcaactcgctgttacataggttcctgactcagga-taaatacaaataagtct 53957753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 54143822 - 54143889
Alignment:
Q  323 ggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaa 390  Q
    |||||| |||||||||||  || ||||||| || ||||||||| | ||||||||||| ||||||||||    
T  54143822 ggaacaaaaatagaaatatcttattgaaaagtgatgaaaaatggtaaattcaactttttaaaagttaa 54143889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 22455369 - 22455423
Alignment:
Q  334 agaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagtt 388  Q
    ||||||||| | || |||| ||||||||||| || ||||||||||||||||||||    
T  22455369 agaaataatgtattaaaaagtggtgaaaaatattaaattcaactttctaaaagtt 22455423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 510
Target Start/End: Complemental strand, 48574534 - 48574504
Alignment:
Q  480 tccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||||||||||||||||    
T  48574534 tccctgactcaggattaaatacaaataagtc 48574504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 28954302 - 28954253
Alignment:
Q  346 ttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    |||| |||||||| ||| |||||||||||||| |||||||||| ||||||    
T  28954302 ttgataaatggtggaaagtgttgaattcaactgtctaaaagtttaaaagt 28954253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 509
Target Start/End: Complemental strand, 53959187 - 53959146
Alignment:
Q  468 ctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagt 53959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 62583 - 62663
Alignment:
Q  312 attggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  62583 attggttaagat-aacataaatagaaataattttttgaaaaatggtgaaaagtgttgaattcaactttctaaaagttaaaaa 62663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 69915 - 69995
Alignment:
Q  312 attggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  69915 attggttaagat-aacataaatagaaataattttttgaaaaatggtgaaaagtgttgaattcaactttctaaaagttaaaaa 69995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 311 - 404
Target Start/End: Complemental strand, 43819643 - 43819551
Alignment:
Q  311 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttc 404  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||  |||||||    
T  43819643 cattggttaagag-aacatgaatagaaataatttgttgaaaaatgatgaaaaatgttgaattcaactttctaaaagtcaaaaagttgtaatttc 43819551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 313 - 431
Target Start/End: Complemental strand, 7207310 - 7207194
Alignment:
Q  313 ttggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttccgggtgca 412  Q
    ||||||||||| |||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||  ||| ||||   ||||    
T  7207310 ttggttaagag-aacataaatataaataatttgttgaaaaatgatgaaaagtgttgaattcaaatttctaaaagttaaaaagttgtaa-ttcccaatgca 7207213  T
Q  413 aaattattacttttagttt 431  Q
    |||||| ||||||||||||    
T  7207212 aaattactacttttagttt 7207194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 395
Target Start/End: Complemental strand, 24067074 - 24066973
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    |||||||||||||| | ||||| |||||||  |||||||||| ||||||||| |||  |||||||||||| ||||||||||||| |||||||||||||||    
T  24067074 taaagagtgtccttggggcatttgttaagaa-aacataaatataaataatttgttgggaaatggtgaaaagtgttgaattcaaccttctaaaagttaaaa 24066976  T
Q  393 agt 395  Q
    |||    
T  24066975 agt 24066973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 32898560 - 32898490
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||| |||| ||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  32898560 tcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtc 32898490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 440 - 524
Target Start/End: Complemental strand, 35178919 - 35178835
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctgcttctccact 524  Q
    ||||||| |||||||||| ||||| ||||||||| || | ||||||||||||||||||||||||||||||| ||| |||| ||||    
T  35178919 tcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcact 35178835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 617617 - 617525
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 387  Q
    |||||||||||||| |  |||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||||| |||||||||||||||||||    
T  617617 taaagagtgtccttggaacattcgttaagag-aacataaataaaaataatttgttaaaaaatggtgagaaatgtt-aattcaactttctaaaagt 617525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 624010 - 623918
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 387  Q
    |||||||||||||| |  |||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||||| |||||||||||||||||||    
T  624010 taaagagtgtccttggaacattcgttaagag-aacataaataaaaataatttgttaaaaaatggtgagaaatgtt-aattcaactttctaaaagt 623918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 395
Target Start/End: Complemental strand, 42543095 - 42542994
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    ||||||||| |||| | ||||||||||| | ||||||||||| ||| ||||| || |||||| ||||||| |||||||||||||| ||||||||| ||||    
T  42543095 taaagagtgcccttggggcattggttaa-atgaacataaataaaaacaatttgtttaaaaatagtgaaaagtgttgaattcaactctctaaaagtaaaaa 42542997  T
Q  393 agt 395  Q
    |||    
T  42542996 agt 42542994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 444 - 510
Target Start/End: Original strand, 35177407 - 35177473
Alignment:
Q  444 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||| | | |||| ||||||||||||||| |||||||||| ||||||||||||||||||||    
T  35177407 tttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtc 35177473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 41754006 - 41754076
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||  | ||||||| |||||||||||| ||||||||||||||||||||| ||| |||||    
T  41754006 tcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtc 41754076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 41754891 - 41754841
Alignment:
Q  459 tgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  41754891 tgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagt 41754841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 589913 - 589998
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttc 380  Q
    |||||||||||||| |  |||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||||| ||||||||||||    
T  589913 taaagagtgtccttggaacattcgttaagag-aacataaataaaaataatttgttaaaaaatggtgagaaatgtt-aattcaactttc 589998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 504
Target Start/End: Original strand, 28005359 - 28005415
Alignment:
Q  448 gtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||||||||| | ||||||| ||||||| |||||||||||||||||| |||||||||    
T  28005359 gtccctgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaa 28005415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 504
Target Start/End: Original strand, 28062662 - 28062718
Alignment:
Q  448 gtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||||||||| | ||||||| ||||||| |||||||||||||||||| |||||||||    
T  28062662 gtccctgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaa 28062718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 1953084 - 1953014
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    |||||||||||||||| | |||| |||| ||||| ||||||| |||||| ||||||| ||||||||||||||    
T  1953084 tcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtct 1953014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 510
Target Start/End: Original strand, 33314872 - 33314939
Alignment:
Q  443 ctttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||| |||||| ||| |||||||||||||| || || || |||||||| |||||||||||||||||||    
T  33314872 ctttggtcccttactttgcacctcgctgtctcaaaggtctctgactcaagattaaatacaaataagtc 33314939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 12221068 - 12221022
Alignment:
Q  357 tgaaaaatgttgaattcaactttctaaaagttaaaaagtaataattt 403  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||    
T  12221068 tgaaaaatgttgaattcaactttttaaaagtttaaaagttataattt 12221022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 504
Target Start/End: Original strand, 59548 - 59624
Alignment:
Q  430 ttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    ||||||||||  |||||||||||||||||| | |||||||||||||| |   ||||||||||||||| || ||||||    
T  59548 ttgagtaaatagtcactttagtccctgactttacacctcgctgtcactttagtccctgactcaggataaactacaaa 59624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 30134574 - 30134643
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||||||||||| | ||| ||||||||||||||||| || ||||  ||||| ||||||||||||| ||||    
T  30134574 tcactttagtccttaactctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagt 30134643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 393
Target Start/End: Original strand, 27737704 - 27737803
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    ||||||||||| || |  |||| |||||||| ||||||| |||||||||| | || ||||||  | |||| ||||||||| |||||||||||||| ||||    
T  27737704 taaagagtgtctttggaacattagttaagag-aacataattagaaataatatgttaaaaaataattaaaagtgttgaatttaactttctaaaagtcaaaa 27737802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 514
Target Start/End: Original strand, 1951970 - 1952024
Alignment:
Q  459 tgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||| ||| | |||||||||| |||||||||||||||||||||||||| ||||    
T  1951970 tgcaccttgctattacatagatcc-tgactcaggattaaatacaaataagtttctg 1952024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 393
Target Start/End: Complemental strand, 8210213 - 8210174
Alignment:
Q  354 tggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  8210213 tggtgaaaaatgatgaattcaactttttaaaagttaaaaa 8210174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 4308880 - 4308834
Alignment:
Q  346 ttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    |||||||||||| ||||||| |||||| |||||| ||||||||||||    
T  4308880 ttgaaaaatggtaaaaaatgatgaatttaactttataaaagttaaaa 4308834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 5965536 - 5965486
Alignment:
Q  461 cacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    ||||||| ||||||| |  ||||||||||||||||||||||||| ||||||    
T  5965536 cacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtct 5965486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 10407699 - 10407629
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||| |||| | |||| ||| ||||||||||| ||  ||||| ||||||||| |||||||||||    
T  10407699 tcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtc 10407629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 509
Target Start/End: Complemental strand, 5738138 - 5738069
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||||||||| ||||||| ||||  ||| ||| |||||| ||| ||||||| ||||||||||||| ||||    
T  5738138 tcactttagttcctgactttgcatatcgttgtgacataggtccatgactcaagattaaatacaaagaagt 5738069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 311 - 395
Target Start/End: Original strand, 51046645 - 51046728
Alignment:
Q  311 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  51046645 cattggttaagag-aacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaagtcaaaaagt 51046728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 448 - 514
Target Start/End: Complemental strand, 7945661 - 7945595
Alignment:
Q  448 gtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  7945661 gtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctg 7945595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 32268102 - 32268033
Alignment:
Q  324 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  32268102 gaacataaataaaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaaagtcaaaaa 32268033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 5782426 - 5782496
Alignment:
Q  444 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||| |||||||||    
T  5782426 tttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctg 5782496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 313 - 405
Target Start/End: Complemental strand, 13925191 - 13925101
Alignment:
Q  313 ttggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttcc 405  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||| ||||||||| ||||||||| |||||||  ||||||||    
T  13925191 ttggttaagag-aacataaatagaaataatttgttgaaaaatagtgaaaagtgtt-aattcaactatctaaaagtcaaaaagttgtaatttcc 13925101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 32665885 - 32665814
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    |||||||||||||||| | |||| ||||||||||||||| || |||||||| ||||||||||||||||||||    
T  32665885 tcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtct 32665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 10332994 - 10333064
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||| |||||||||    
T  10332994 tcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtc 10333064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 52440662 - 52440600
Alignment:
Q  452 ctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||| ||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||    
T  52440662 ctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctg 52440600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 1107386 - 1107462
Alignment:
Q  310 gcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 387  Q
    |||||||||||||| |||||||||| ||||||||| || | ||| |||||||| ||||||||||||||| ||||||||    
T  1107386 gcattggttaagag-aacataaataaaaataatttgttaataaacggtgaaaagtgttgaattcaacttcctaaaagt 1107462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 52439487 - 52439560
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctct 513  Q
    ||||||||| |||||| | |||| ||||||||||||||| || ||| |||||||||||||||| ||||||||||    
T  52439487 tcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtctct 52439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 510
Target Start/End: Original strand, 7944169 - 7944233
Alignment:
Q  446 tagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||| | |||| ||||||||||||||| |||||||||||  ||||||||||||||||||    
T  7944169 tagtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtc 7944233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 507
Target Start/End: Original strand, 9339657 - 9339721
Alignment:
Q  443 ctttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataa 507  Q
    ||||||||||||| | |||| |||| ||| |||||| ||||||||||||||||||||||||||||    
T  9339657 ctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataa 9339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 9341109 - 9341066
Alignment:
Q  471 tcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  9341109 tcacataggtccctgactcaggattaaatacaaataagtctctg 9341066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 39421126 - 39421026
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatgg-------tgaaaaatgttgaattcaactttctaaaa 385  Q
    |||| ||||||||| |  ||||||||||||| |||||||||||||||||||| |||||||| ||       |||||| ||||||||||||||||||||||    
T  39421126 taaacagtgtccttgggacattggttaagag-aacataaatagaaataatttgttgaaaaacggtggaaactgaaaagtgttgaattcaactttctaaaa 39421028  T
Q  386 gt 387  Q
    ||    
T  39421027 gt 39421026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 6612427 - 6612501
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||||||| ||||||||||||| | | |  || |||||||| ||||||||||||| |||||||||    
T  6612427 tcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctg 6612501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 22856688 - 22856761
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctct 513  Q
    ||||||||||| |||||| |||||| || ||| ||| |||| | ||||||||||||||||||||| ||||||||    
T  22856688 tcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctct 22856761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 12173173 - 12173221
Alignment:
Q  357 tgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttcc 405  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  12173173 tgaaaaatgttgaattcaactttgtaaaagtcaaaaagttataatttcc 12173221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 510
Target Start/End: Complemental strand, 5783205 - 5783154
Alignment:
Q  459 tgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||| |||||    
T  5783205 tgcacctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtc 5783154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 10333282 - 10333227
Alignment:
Q  459 tgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||| |||||||| |||||| || |||||||| |||||||||||||||||||||||    
T  10333282 tgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctg 10333227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 46289632 - 46289705
Alignment:
Q  357 tgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttccgggtgcaaaattattacttttagttt 431  Q
    ||||||||||||||||| ||||| |||||||||||||||  ||||||||   ||||||| || ||||||||||||    
T  46289632 tgaaaaatgttgaattcgactttttaaaagttaaaaagttgtaatttcc-aatgcaaaactactacttttagttt 46289705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 3894861 - 3894800
Alignment:
Q  325 aacataaatagaaataatttctt-gaaaaatggtgaaaaatgttgaattcaactttctaaaa 385  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||| | |||| |||||    
T  3894861 aacataaatagaaataatttgttagaaaaatagtgaaaaatgttgaatttagctttttaaaa 3894800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 514
Target Start/End: Original strand, 1001164 - 1001236
Alignment:
Q  442 actttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||| ||||| ||||||||| || |||| || ||| |||||| ||||||||||||||  ||||||||    
T  1001164 actttagtccatgactttgcacctcgttgccacaaaggtccatgactcgggattaaatacaaagtagtctctg 1001236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 514
Target Start/End: Complemental strand, 6614051 - 6614020
Alignment:
Q  483 ctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||||||||||||||||||||||||||||    
T  6614051 ctgactcaggattaaatacaaataagtctctg 6614020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 46289579 - 46289645
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaa 360  Q
    ||||||||||| || | ||||||||||| || || ||||||||||||||||| |||||||||| ||||    
T  46289579 taaagagtgtctttagggcattggttaaaag-aatataaatagaaataatttgttgaaaaatgttgaa 46289645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 27210795 - 27210749
Alignment:
Q  347 tgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    ||||||||||||||||||| | |||| |||||| |||||||||||||    
T  27210795 tgaaaaatggtgaaaaatgatcaatttaactttttaaaagttaaaaa 27210749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 41898878 - 41898940
Alignment:
Q  330 aaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    ||||||||||| | | |||||||||||| |||| || |||||| |||||| ||||||||||||    
T  41898878 aaatagaaatattgtattgaaaaatggtaaaaagtgatgaatttaactttttaaaagttaaaa 41898940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 8975167 - 8975227
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 500  Q
    ||||||| |||||| ||| ||||||| | ||||||| || ||||||||||| |||||||||    
T  8975167 tcactttggtccctaactttgcaccttgttgtcacaaaggtccctgactcaagattaaata 8975227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 11060899 - 11060835
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||||||  ||| ||||| ||||||||||||||||| || ||| |||||||  ||||||||||||    
T  11060899 tcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaa 11060835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 405
Target Start/End: Complemental strand, 1947528 - 1947417
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    |||||||||| |||   |||||||||||||| |||||||||||||||||||| ||| |||||||| |||| |||| ||||||||||||||||||| ||||    
T  1947528 taaagagtgttcttgaggcattggttaagag-aacataaatagaaataatttgttggaaaatggtaaaaagtgttaaattcaactttctaaaagtcaaaa 1947430  T
Q  393 agtaataatttcc 405  Q
    |||  ||||||||    
T  1947429 agttgtaatttcc 1947417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 293 - 404
Target Start/End: Original strand, 16441775 - 16441885
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    |||||||||| |||||  |||||||||| || || ||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  16441775 taaagagtgttctttggacattggttaaaag-aatataaatataaataatttgttgaaaagtggtgaaaaatgttgaattcaaatttctaaaagtaaaaa 16441873  T
Q  393 agtaataatttc 404  Q
    |||  |||||||    
T  16441874 agttgtaatttc 16441885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 30748007 - 30748081
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  30748007 tcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctg 30748081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 19646090 - 19646027
Alignment:
Q  324 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 387  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  19646090 gaacataaatagaaaaaatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaagt 19646027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 31218963 - 31219032
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||||||| || |||||| |||||||||||||||||||| ||| | ||||||||||||||||||| ||||    
T  31218963 tcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagt 31219032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 509
Target Start/End: Complemental strand, 31219275 - 31219206
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||||||| ||||||||| |||||||||||||||||||| ||  | ||||||||||||||||||| ||||    
T  31219275 tcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagt 31219206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 5138565 - 5138503
Alignment:
Q  324 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 387  Q
    ||||||||||| ||||| ||| || ||||||  ||||||||||||||||||| |||||||||||    
T  5138565 gaacataaatacaaatattttattaaaaaata-tgaaaaatgttgaattcaaatttctaaaagt 5138503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 27127493 - 27127586
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 387  Q
    |||||||||||| |  ||||||| |||||| ||  | ||||||||||| | | |||| ||||||||||||||| |||||| |||||| |||||||    
T  27127493 taaagagtgtccatgatgcattgtttaagatgataa-aaatagaaatattgtattgagaaatggtgaaaaatgatgaatttaactttttaaaagt 27127586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 6468871 - 6468822
Alignment:
Q  465 tcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||||||| || ||||||||||| |||||||||||||  ||||||||    
T  6468871 tcgctgtcacaaaggtccctgactcatgattaaatacaaaatagtctctg 6468822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 504
Target Start/End: Original strand, 23507957 - 23508020
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    ||||||||||| ||| || | |||||| ||||||||||| | ||||| |||||||||||||||||    
T  23507957 tcactttagtctctg-ctctacacctccctgtcacataggttcctgattcaggattaaatacaaa 23508020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 24459561 - 24459487
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||| |||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  24459561 tcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctg 24459487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 31091642 - 31091572
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  31091642 tcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtc 31091572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 32766354 - 32766284
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  32766354 tcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtc 32766284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 40000449 - 40000376
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctct 513  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  40000449 tcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctct 40000376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 7888572 - 7888643
Alignment:
Q  324 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| |||||||    
T  7888572 gaacataaatagaaataatttcttgaaaaatggtgaaaagtgttgaatttaattttataaaagtaaaaaagt 7888643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 39015013 - 39015084
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  39015013 tcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtct 39015084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 2910108 - 2910182
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||  ||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2910108 tcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctg 2910182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 10824334 - 10824259
Alignment:
Q  311 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 387  Q
    ||||||||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||    
T  10824334 cattggttaagag-aacataaataaaaataatttgttggaaagtggtgaaaaatgttgaatttaactttctaaaagt 10824259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 443 - 514
Target Start/End: Complemental strand, 17330342 - 17330271
Alignment:
Q  443 ctttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||||| ||| | |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  17330342 ctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctg 17330271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 31090176 - 31090246
Alignment:
Q  444 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||| | |||| ||||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  31090176 tttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctg 31090246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 803889 - 803980
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaa 385  Q
    ||||||||| | || | |||||||||||||| |||||||||| ||||||||| ||||||| ||||||||| | |||||||||| |||||||||    
T  803889 taaagagtgccattggagcattggttaagag-aacataaataaaaataatttgttgaaaagtggtgaaaagtattgaattcaaatttctaaaa 803980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 24458068 - 24458142
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||||| | |||| |||||| |||||||| |||||||||||  ||||||||||||||||| ||||    
T  24458068 tcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctg 24458142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 34037788 - 34037717
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    |||||||||||| ||||| ||||||| ||||||| | || ||| | ||||||||||||||||||||||||||    
T  34037788 tcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtct 34037717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 32764946 - 32765016
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||| | |||| || | ||||| |||| || ||||||||||||||||||||||||||||    
T  32764946 tcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtc 32765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 17466930 - 17466869
Alignment:
Q  453 tgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||| |||||||||||||||||||   | |||||||||||||||||||||| |||||||||    
T  17466930 tgactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctg 17466869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 39016496 - 39016424
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccct--gactcaggattaaatacaaataagtc 510  Q
    ||||||||||| |||| | |||| |||||||||||||| ||| ||  ||||||||||||||||||||||||||    
T  39016496 tcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc 39016424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 445648 - 445602
Alignment:
Q  349 aaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    |||||||||||||| ||||||||||||||| |||||||| |||||||    
T  445648 aaaaatggtgaaaagtgttgaattcaacttcctaaaagtcaaaaagt 445602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 5915107 - 5915037
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||| ||||| ||||||||||| ||| |||| ||  |||||||| |||||||||||| |||||    
T  5915107 tcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtc 5915037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 504
Target Start/End: Complemental strand, 15442063 - 15442022
Alignment:
Q  463 cctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  15442063 cctcgctgtcacaaagattcctgactcaggattaaatacaaa 15442022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 395
Target Start/End: Original strand, 6975837 - 6975919
Alignment:
Q  311 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    |||||| |||||| |||| ||||| ||||||| | ||||||  |||||||||||||||||||||||| |||| ||||| ||||||    
T  6975837 cattggctaagag-aacaaaaataaaaataatatgttgaaag-tggtgaaaaatgttgaattcaactctctagaagtttaaaagt 6975919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 14704048 - 14704084
Alignment:
Q  474 catagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||| |||||||||||||||||||||||||||||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtc 14704084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 14887626 - 14887555
Alignment:
Q  429 tttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaa 498  Q
    |||||||||||  ||||||| |||||  ||| ||||||||||||||||  || |||||||||||||||||||    
T  14887626 tttgagtaaatggtcactttggtcccaaactctgcacctcgctgtcacgaaggtccctgactcaggattaaa 14887555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 21733889 - 21733812
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcag---gattaaatacaaataagtctctg 514  Q
    ||||| |||||||||||| || || ||| ||||||| || |||||||||||    |||||||||||||||||||||||    
T  21733889 tcactctagtccctgactttgtacatcgttgtcacaaaggtccctgactcatcatgattaaatacaaataagtctctg 21733812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 33726451 - 33726405
Alignment:
Q  346 ttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    |||||||||||||||||||  | |||| |||||||||||||||||||    
T  33726451 ttgaaaaatggtgaaaaataataaatttaactttctaaaagttaaaa 33726405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 2239652 - 2239607
Alignment:
Q  347 tgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 392  Q
    ||||||||||| ||||||| |||||| |||||| ||||||||||||    
T  2239652 tgaaaaatggtaaaaaatgatgaatttaactttttaaaagttaaaa 2239607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 504
Target Start/End: Complemental strand, 12746332 - 12746252
Alignment:
Q  426 tagtttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    ||||||||||||||  ||||||| || | ||||| |||||||||| |||  | || | |||||||||||||||||||||||    
T  12746332 tagtttgagtaaatggtcactttggttcttgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaa 12746252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 524
Target Start/End: Original strand, 7073675 - 7073731
Alignment:
Q  468 ctgtcacatagatccctgactcaggattaaatacaaataagtctctgcttctccact 524  Q
    ||||| ||||| || |||| || |||||||||||||||||||||||| |||| ||||    
T  7073675 ctgtcgcataggtctctgattcgggattaaatacaaataagtctctgattctgcact 7073731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 510
Target Start/End: Original strand, 7412122 - 7412170
Alignment:
Q  462 acctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||| ||||||||||||| |||||||| ||||||||| ||| |||||    
T  7412122 acctcgttgtcacatagatctctgactcaagattaaatataaagaagtc 7412170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 34582785 - 34582721
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||| ||||||||||||| ||||||| ||||| ||| || ||  |||||| ||||||||||||||    
T  34582785 tcacgttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaa 34582721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 9025 - 9093
Alignment:
Q  325 aacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  9025 aacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaagtcaaaaa 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 440 - 507
Target Start/End: Complemental strand, 28591229 - 28591162
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataa 507  Q
    |||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28591229 tcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataa 28591162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 8074459 - 8074529
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||| | |||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  8074459 tcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtc 8074529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 452 - 524
Target Start/End: Original strand, 25590451 - 25590522
Alignment:
Q  452 ctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctgcttctccact 524  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||    
T  25590451 ctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctgattctgcact 25590522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 9538164 - 9538090
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||| |||||||||| |||| |||| ||||| |||| ||||||||||||||||||||||||| |||||||||    
T  9538164 tcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctg 9538090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 13651234 - 13651173
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaataca 502  Q
    |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  13651234 tcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 18400198 - 18400268
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||| ||| |||||    
T  18400198 tcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtc 18400268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 21069297 - 21069367
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||| |||||| ||||||||| ||||||| || || ||||||||||||||||||||||||||||    
T  21069297 tcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtc 21069367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 509
Target Start/End: Original strand, 19182971 - 19183027
Alignment:
Q  453 tgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  19182971 tgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagt 19183027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 546150 - 546081
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||||| || | |||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  546150 tcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtc 546081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 4592869 - 4592939
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||| | || | ||||||||||||||  ||||||||||| |||||||||||||||||||    
T  4592869 tcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtc 4592939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 510
Target Start/End: Original strand, 9537033 - 9537101
Alignment:
Q  442 actttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||| ||| |||||||||||||||||||| || |||||| || |||||||||||| |||||    
T  9537033 actttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc 9537101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 2464677 - 2464747
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||| |||| | |||| |||||||||| |||| ||| ||||||| |||||||||||||||||||    
T  2464677 tcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtc 2464747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 16611736 - 16611810
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||| | | ||||| | |||||||||||||||||| || |||||||||||||||||||||| ||| |||||    
T  16611736 tcactttaattcttgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctg 16611810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 40612774 - 40612712
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaataca 502  Q
    |||||||||||||||| | |||| ||| ||||||| ||| |||||||||||||||||||||||    
T  40612774 tcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaataca 40612712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 524
Target Start/End: Complemental strand, 8075935 - 8075864
Alignment:
Q  453 tgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctgcttctccact 524  Q
    ||||| ||||||||||||| | |||||||||||| ||| ||||||||||||| |||| |||| |||| ||||    
T  8075935 tgactctgcacctcgctgttagatagatccctgattcaagattaaatacaaaaaagtatctgattctgcact 8075864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 14891258 - 14891199
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaat 499  Q
    ||||||| |||||| ||| |||||||||||||||||||| || |||||||| ||||||||    
T  14891258 tcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgattaaat 14891199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 28782773 - 28782706
Alignment:
Q  328 ataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    ||||||||||||||||| || |||||| || |||| ||||||||||||| || ||||||| |||||||    
T  28782773 ataaatagaaataatttgttaaaaaattgtaaaaagtgttgaattcaacattttaaaagtaaaaaagt 28782706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 2466889 - 2466819
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||| ||| |||||| ||||||||||| |||||||| ||  ||| ||||||||||||| |||||||||    
T  2466889 tcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtc 2466819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 510
Target Start/End: Complemental strand, 4594176 - 4594144
Alignment:
Q  478 gatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||||||||||||||||||||||    
T  4594176 gatccctgactcaggattaaatacaaataagtc 4594144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 10317315 - 10317259
Alignment:
Q  324 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttc 380  Q
    ||||| ||||||||| ||| | |||||||||| |||||| |||||||||||||||||    
T  10317315 gaacaaaaatagaaagaatgtgttgaaaaatgatgaaaagtgttgaattcaactttc 10317259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 19186305 - 19186261
Alignment:
Q  470 gtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||    
T  19186305 gtcacataggtccctgacttaggattaaatacaaacaagtctctg 19186261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 510
Target Start/End: Original strand, 544668 - 544726
Alignment:
Q  451 cctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||| ||||| ||| ||||| |||| || ||||||||||||||||||||||||||||    
T  544668 cctgactctgcacttcg-tgtcagataggtctctgactcaggattaaatacaaataagtc 544726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 32640315 - 32640366
Alignment:
Q  459 tgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||| |||||||||||  || | |||||||||||||||||||||||||    
T  32640315 tgcacctcactgtcacataggaccataactcaggattaaatacaaataagtc 32640366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 16979000 - 16979070
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||| ||||| ||||||| |||| |||| || ||  |||||||| ||||||| ||||||||||    
T  16979000 tcactttagtccttgactttgcaccttgctgccacaaaggtcattgactcagaattaaatgcaaataagtc 16979070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 24900447 - 24900410
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacata 477  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  24900447 tcactttggtccctgactctgcacctcgctgtcacata 24900410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 405
Target Start/End: Original strand, 4867772 - 4867866
Alignment:
Q  310 gcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttcc 405  Q
    |||||||||||||| |||||||||| ||||||||| ||||||| ||||||||| |||||||||||| ||| ||||||| |||||||  ||||||||    
T  4867772 gcattggttaagag-aacataaataaaaataatttgttgaaaagtggtgaaaagtgttgaattcaaatttttaaaagtcaaaaagttgtaatttcc 4867866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 31844730 - 31844800
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||||||||||||  || |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  31844730 tcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtc 31844800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 45674164 - 45674248
Alignment:
Q  310 gcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    ||||||||||| || || |||||||||| |||||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  45674164 gcattggttaaaagaaa-ataaatagaattaatttgttgaaaaatagtgaaaagtgttgaattcaactttcttaaagttaaaaagt 45674248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 53771164 - 53771100
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||    
T  53771164 tcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaa 53771100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 429 - 524
Target Start/End: Original strand, 47874559 - 47874656
Alignment:
Q  429 tttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctgcttctccact 524  Q
    |||||||||||  ||||||||||| |||| | |||| |||||| |||||||| ||||||||||| ||||||||||||||||||| ||| |||| ||||    
T  47874559 tttgagtaaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcact 47874656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 47878599 - 47878529
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||  ||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  47878599 tcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtc 47878529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 42278057 - 42278126
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||||||||||| ||| | |||| || |||||||||||| |||||||||| |||||||||||||||||||    
T  42278057 tcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagt 42278126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 510
Target Start/End: Complemental strand, 42392016 - 42391933
Alignment:
Q  429 tttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||  ||||||||||| ||||||  ||||||| ||||||||||| || |||||||| |||||||||||||| ||||    
T  42392016 tttgagtaaatgatcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtc 42391933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 53770341 - 53770412
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    ||||||||||| |||||| ||||||||||  |||||||| | |||||||||| |||||||||||| ||||||    
T  53770341 tcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtct 53770412  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 459 - 509
Target Start/End: Original strand, 54574452 - 54574502
Alignment:
Q  459 tgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||||||    
T  54574452 tgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagt 54574502  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 45684046 - 45683989
Alignment:
Q  338 ataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 395  Q
    ||||||| ||||||| ||||||||| |||||||||||| ||| |||||||||||||||    
T  45684046 ataatttgttgaaaagtggtgaaaagtgttgaattcaaatttataaaagttaaaaagt 45683989  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 4703332 - 4703261
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    ||||||||||  |||||| | || ||||||||||||||| ||||| |||||| |||||||||||| ||||||    
T  4703332 tcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtct 4703261  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 509
Target Start/End: Original strand, 39868932 - 39868999
Alignment:
Q  442 actttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagt 509  Q
    ||||||||| |||||| ||||||||||||| ||| || |||||||||||  |||||||||||| ||||    
T  39868932 actttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt 39868999  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 19051346 - 19051272
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||||||| | ||||||| || |||| || || |||||||  ||||||||||||| |||||||||    
T  19051346 tcactttagtccctgactctacacctcgttggcacaaaggtcactgactcgagattaaatacaaagaagtctctg 19051272  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 26173057 - 26172983
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtctctg 514  Q
    |||||||||||||  ||| |||||||  |||||| | || ||| ||||||| |||||||||||||||||||||||    
T  26173057 tcactttagtccccaactatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctg 26172983  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 48740135 - 48740065
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||| || || ||||||||  |||||| |||||||||||||||  |||||||||||| |||||    
T  48740135 tcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtc 48740065  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 26685528 - 26685488
Alignment:
Q  444 tttagtccctgactgtgcacctcgctgtcacatagatccct 484  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  26685528 tttagtccctgactctgcacctcgctgtcacataggtccct 26685488  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 379
Target Start/End: Original strand, 29722067 - 29722152
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaacttt 379  Q
    ||||||||| |||| | |||||||||| | |||||| ||||||| ||| | | |||||| ||||||||||||| |||||| ||||||    
T  29722067 taaagagtgcccttagggcattggttagg-ggaacaaaaatagatatattgtgttgaaatatggtgaaaaatgatgaatttaacttt 29722152  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 35911224 - 35911151
Alignment:
Q  357 tgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttccgggtgcaaaattattacttttagttt 431  Q
    |||||| |||||||||||| ||| ||||||| ||||||| ||||||| |   |||||||||| ||||||||||||    
T  35911224 tgaaaagtgttgaattcaaatttttaaaagtcaaaaagttataattttc-aatgcaaaattactacttttagttt 35911151  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 510
Target Start/End: Original strand, 44158516 - 44158582
Alignment:
Q  444 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    ||||| ||| |||| ||||||||| ||| ||| || | ||||||||||||||||||||||| |||||    
T  44158516 tttagcccccgactctgcacctcgttgttacagaggttcctgactcaggattaaatacaaagaagtc 44158582  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 45257608 - 45257688
Alignment:
Q  312 attggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 393  Q
    |||||||||||| |||| ||||||||||| ||| |||  || || |||||| || ||||||||||||| |||||| ||||||    
T  45257608 attggttaagag-aacaaaaatagaaatattttgttgggaagtgttgaaaagtggtgaattcaactttttaaaagctaaaaa 45257688  T

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Target: scaffold0209 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 29441 - 29349
Alignment:
Q  293 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 387  Q
    |||||||||||||| |  |||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||||| |||||||||||||||||||    
T  29441 taaagagtgtccttggaacattcgttaagag-aacataaataaaaataatttgttaaaaaatggtgagaaatgtt-aattcaactttctaaaagt 29349  T

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Target: scaffold0034 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 116063 - 116133
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||| ||| | | |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  116063 tcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 116133  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 444 - 510
Target Start/End: Complemental strand, 74424 - 74358
Alignment:
Q  444 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||||||||||| |||| ||| ||||||||||| ||||| ||||| ||||||||||||| |||||    
T  74424 tttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtc 74358  T

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Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 444 - 510
Target Start/End: Original strand, 79085 - 79151
Alignment:
Q  444 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtc 510  Q
    |||||| ||||||| |||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||    
T  79085 tttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtc 79151  T

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Target: scaffold0039; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 79798 - 79727
Alignment:
Q  440 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaataagtct 511  Q
    |||||||| |||||||||  |||||||| ||| |||||  | ||||||||| ||||||||||||| ||||||    
T  79798 tcactttaatccctgactcggcacctcgttgttacataagttcctgactcatgattaaatacaaagaagtct 79727  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 36650 - 36574
Alignment:
Q  429 tttgagtaaatt--cactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatacaaa 504  Q
    ||||||||||||  ||||||||||||||||  ||||||||| ||||||| || || || |||| ||||||||||||||    
T  36650 tttgagtaaattgtcactttagtccctgaccctgcacctcg-tgtcacaaaggtctctaactcgggattaaatacaaa 36574  T

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