View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11501_low_33 (Length: 204)

Name: NF11501_low_33
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11501_low_33
NF11501_low_33
[»] chr4 (42 HSPs)
chr4 (1-201)||(54435233-54435433)
chr4 (133-202)||(16605693-16605762)
chr4 (134-202)||(14801827-14801895)
chr4 (134-202)||(15507942-15508010)
chr4 (134-202)||(35028267-35028335)
chr4 (156-204)||(32950231-32950279)
chr4 (134-202)||(34765649-34765717)
chr4 (154-202)||(52298117-52298165)
chr4 (156-202)||(18831440-18831486)
chr4 (136-202)||(53701903-53701969)
chr4 (137-202)||(37976425-37976490)
chr4 (154-203)||(41583520-41583569)
chr4 (156-204)||(9145026-9145074)
chr4 (134-202)||(24411449-24411517)
chr4 (156-204)||(27934621-27934669)
chr4 (134-202)||(35508509-35508577)
chr4 (156-204)||(38012259-38012307)
chr4 (156-204)||(42738291-42738339)
chr4 (134-202)||(54086964-54087032)
chr4 (132-203)||(56014815-56014886)
chr4 (156-202)||(4982986-4983032)
chr4 (156-202)||(13058128-13058174)
chr4 (156-202)||(23613400-23613446)
chr4 (148-202)||(24349765-24349819)
chr4 (156-202)||(36009104-36009150)
chr4 (156-202)||(43155787-43155833)
chr4 (156-202)||(49879467-49879513)
chr4 (136-202)||(54434280-54434346)
chr4 (161-202)||(16005929-16005970)
chr4 (154-203)||(40387557-40387606)
chr4 (157-202)||(44967330-44967375)
chr4 (146-202)||(7280387-7280443)
chr4 (156-204)||(9400779-9400827)
chr4 (134-202)||(16006076-16006143)
chr4 (147-199)||(17356204-17356256)
chr4 (156-204)||(22566888-22566936)
chr4 (154-202)||(23455650-23455698)
chr4 (156-204)||(33247533-33247581)
chr4 (156-204)||(34837334-34837382)
chr4 (134-202)||(35028089-35028157)
chr4 (134-202)||(52909344-52909412)
chr4 (154-202)||(55867403-55867451)
[»] chr5 (29 HSPs)
chr5 (1-204)||(5256148-5256351)
chr5 (134-202)||(11047528-11047596)
chr5 (137-202)||(32242333-32242398)
chr5 (134-202)||(19892577-19892645)
chr5 (154-202)||(22870423-22870471)
chr5 (137-202)||(5993980-5994045)
chr5 (134-202)||(13962955-13963023)
chr5 (156-204)||(297274-297322)
chr5 (156-204)||(6758125-6758173)
chr5 (134-202)||(13362497-13362565)
chr5 (134-202)||(14194692-14194760)
chr5 (134-202)||(38442159-38442227)
chr5 (134-202)||(39453391-39453459)
chr5 (156-204)||(41930605-41930653)
chr5 (147-202)||(20814417-20814472)
chr5 (147-202)||(35512239-35512294)
chr5 (156-202)||(3529133-3529179)
chr5 (133-202)||(14848974-14849044)
chr5 (158-204)||(31482664-31482710)
chr5 (154-203)||(20857022-20857071)
chr5 (137-202)||(29646634-29646699)
chr5 (157-202)||(38475291-38475336)
chr5 (134-202)||(186510-186578)
chr5 (156-204)||(1506056-1506104)
chr5 (134-202)||(18247175-18247243)
chr5 (154-202)||(22869696-22869744)
chr5 (154-202)||(24547414-24547462)
chr5 (158-202)||(28269681-28269725)
chr5 (158-202)||(28771131-28771175)
[»] chr2 (32 HSPs)
chr2 (60-202)||(25893413-25893555)
chr2 (94-202)||(6573634-6573740)
chr2 (133-202)||(25892485-25892554)
chr2 (137-202)||(36755184-36755249)
chr2 (137-202)||(37895619-37895684)
chr2 (134-202)||(15848179-15848247)
chr2 (134-202)||(36382252-36382320)
chr2 (134-202)||(39423606-39423674)
chr2 (147-202)||(11347514-11347569)
chr2 (133-202)||(6577545-6577614)
chr2 (123-200)||(6846877-6846954)
chr2 (145-202)||(10840567-10840624)
chr2 (137-202)||(44714033-44714098)
chr2 (134-202)||(10712814-10712882)
chr2 (146-202)||(11721371-11721427)
chr2 (156-204)||(14900743-14900791)
chr2 (156-204)||(33739792-33739840)
chr2 (148-202)||(3653363-3653417)
chr2 (156-202)||(6657969-6658015)
chr2 (156-202)||(16099146-16099192)
chr2 (156-202)||(39498401-39498447)
chr2 (137-202)||(2318249-2318314)
chr2 (137-202)||(11349477-11349542)
chr2 (137-202)||(22051266-22051330)
chr2 (137-202)||(36479809-36479874)
chr2 (158-202)||(11163316-11163360)
chr2 (146-202)||(11689632-11689688)
chr2 (156-204)||(13995933-13995981)
chr2 (154-202)||(25623379-25623427)
chr2 (156-204)||(33062310-33062358)
chr2 (156-204)||(41248819-41248867)
chr2 (158-202)||(45556203-45556247)
[»] chr3 (28 HSPs)
chr3 (134-202)||(33156263-33156331)
chr3 (134-202)||(33689648-33689716)
chr3 (148-202)||(54317914-54317968)
chr3 (134-202)||(40758235-40758303)
chr3 (134-202)||(43384374-43384442)
chr3 (132-203)||(25108362-25108433)
chr3 (124-202)||(9367832-9367910)
chr3 (137-202)||(23458251-23458316)
chr3 (156-204)||(8041705-8041753)
chr3 (134-202)||(9294227-9294295)
chr3 (156-204)||(10770751-10770799)
chr3 (136-204)||(25107302-25107370)
chr3 (134-202)||(26463867-26463935)
chr3 (154-202)||(29192126-29192174)
chr3 (156-204)||(36314558-36314606)
chr3 (147-202)||(41988053-41988108)
chr3 (156-204)||(48322637-48322685)
chr3 (154-202)||(51994175-51994223)
chr3 (156-204)||(54466512-54466560)
chr3 (156-202)||(2796270-2796316)
chr3 (156-202)||(19741183-19741229)
chr3 (148-202)||(39399375-39399429)
chr3 (134-202)||(42854526-42854592)
chr3 (154-202)||(3850416-3850464)
chr3 (146-202)||(20704608-20704664)
chr3 (146-202)||(30380937-30380993)
chr3 (154-202)||(32716340-32716388)
chr3 (154-202)||(32717066-32717114)
[»] chr1 (38 HSPs)
chr1 (134-202)||(4960631-4960699)
chr1 (134-202)||(17662119-17662187)
chr1 (134-202)||(27999120-27999188)
chr1 (134-202)||(34850334-34850402)
chr1 (134-202)||(37578461-37578529)
chr1 (137-202)||(6367653-6367718)
chr1 (156-204)||(4716728-4716776)
chr1 (134-202)||(24009810-24009878)
chr1 (134-202)||(32917351-32917419)
chr1 (134-202)||(40210639-40210707)
chr1 (115-202)||(25065880-25065967)
chr1 (133-171)||(44523404-44523442)
chr1 (157-202)||(10304147-10304192)
chr1 (137-202)||(13914339-13914404)
chr1 (134-202)||(14879062-14879130)
chr1 (156-204)||(24905427-24905475)
chr1 (156-204)||(28011452-28011500)
chr1 (156-204)||(33442854-33442902)
chr1 (154-202)||(34849102-34849150)
chr1 (158-202)||(36694541-36694585)
chr1 (158-202)||(36710642-36710686)
chr1 (134-202)||(42248564-42248632)
chr1 (146-202)||(42267394-42267450)
chr1 (134-202)||(43758913-43758981)
chr1 (134-202)||(46163121-46163189)
chr1 (147-202)||(1841550-1841605)
chr1 (156-202)||(183482-183528)
chr1 (156-202)||(25647975-25648021)
chr1 (156-202)||(31514577-31514623)
chr1 (157-202)||(10304014-10304059)
chr1 (137-202)||(19017901-19017966)
chr1 (137-202)||(34464721-34464786)
chr1 (134-202)||(1103552-1103620)
chr1 (154-202)||(13295226-13295274)
chr1 (146-202)||(21444685-21444741)
chr1 (146-202)||(22103787-22103843)
chr1 (134-202)||(30711418-30711486)
chr1 (156-204)||(52134157-52134205)
[»] scaffold0005 (1 HSPs)
scaffold0005 (134-202)||(37832-37900)
[»] chr8 (23 HSPs)
chr8 (134-202)||(13186151-13186219)
chr8 (134-202)||(16388795-16388863)
chr8 (137-202)||(36928567-36928632)
chr8 (134-202)||(4405929-4405997)
chr8 (134-202)||(35756673-35756741)
chr8 (134-201)||(31608782-31608849)
chr8 (157-202)||(12199211-12199256)
chr8 (157-202)||(12443639-12443684)
chr8 (157-202)||(36186359-36186404)
chr8 (156-204)||(3041716-3041764)
chr8 (156-204)||(36325323-36325371)
chr8 (156-204)||(38845559-38845607)
chr8 (134-202)||(39071767-39071835)
chr8 (156-204)||(40775910-40775958)
chr8 (156-204)||(44407117-44407165)
chr8 (159-202)||(12273147-12273190)
chr8 (156-202)||(1425313-1425359)
chr8 (156-202)||(23663805-23663851)
chr8 (157-202)||(38862709-38862754)
chr8 (134-202)||(40318233-40318301)
chr8 (156-204)||(2266581-2266629)
chr8 (156-204)||(11674784-11674831)
chr8 (134-202)||(31873168-31873236)
[»] chr7 (27 HSPs)
chr7 (134-202)||(5457176-5457244)
chr7 (137-202)||(3914229-3914294)
chr7 (153-202)||(45010892-45010941)
chr7 (134-202)||(2640447-2640515)
chr7 (134-202)||(28469277-28469345)
chr7 (134-202)||(40379860-40379928)
chr7 (134-202)||(45915749-45915817)
chr7 (140-202)||(11397469-11397531)
chr7 (137-202)||(42731510-42731575)
chr7 (134-202)||(10935885-10935953)
chr7 (154-202)||(12644094-12644142)
chr7 (154-202)||(27396884-27396932)
chr7 (156-204)||(30948420-30948468)
chr7 (134-202)||(32053412-32053480)
chr7 (156-204)||(32680855-32680903)
chr7 (154-202)||(45914615-45914663)
chr7 (123-202)||(20426588-20426667)
chr7 (136-202)||(42019868-42019934)
chr7 (156-202)||(17102111-17102157)
chr7 (156-202)||(27991830-27991876)
chr7 (154-202)||(4226216-4226264)
chr7 (154-202)||(12643191-12643239)
chr7 (134-202)||(23181263-23181331)
chr7 (134-202)||(24388910-24388978)
chr7 (156-204)||(34928910-34928958)
chr7 (156-204)||(39686794-39686842)
chr7 (154-202)||(43124441-43124489)
[»] chr6 (17 HSPs)
chr6 (134-202)||(33647054-33647122)
chr6 (134-202)||(21627982-21628050)
chr6 (134-202)||(33517625-33517693)
chr6 (118-202)||(140993-141077)
chr6 (118-202)||(149014-149098)
chr6 (137-202)||(11392929-11392994)
chr6 (134-202)||(12080727-12080795)
chr6 (156-204)||(28000645-28000693)
chr6 (134-202)||(30725850-30725918)
chr6 (134-202)||(30803952-30804020)
chr6 (156-203)||(30337539-30337586)
chr6 (134-202)||(3059348-3059416)
chr6 (156-204)||(363090-363138)
chr6 (146-202)||(1215147-1215203)
chr6 (134-202)||(12407599-12407667)
chr6 (156-204)||(14196875-14196923)
chr6 (154-202)||(26463270-26463318)
[»] scaffold0347 (1 HSPs)
scaffold0347 (115-202)||(14515-14602)
[»] scaffold0031 (1 HSPs)
scaffold0031 (138-202)||(69056-69120)
[»] scaffold0220 (1 HSPs)
scaffold0220 (123-202)||(23322-23401)
[»] scaffold0559 (1 HSPs)
scaffold0559 (156-204)||(1322-1370)
[»] scaffold0024 (1 HSPs)
scaffold0024 (156-204)||(141854-141902)
[»] scaffold0020 (1 HSPs)
scaffold0020 (156-202)||(139763-139809)
[»] scaffold0007 (1 HSPs)
scaffold0007 (156-202)||(1860-1906)
[»] scaffold0295 (1 HSPs)
scaffold0295 (134-202)||(2234-2302)
[»] scaffold0205 (1 HSPs)
scaffold0205 (156-204)||(21229-21277)
[»] scaffold0075 (1 HSPs)
scaffold0075 (134-202)||(14520-14588)
[»] scaffold0008 (1 HSPs)
scaffold0008 (134-202)||(239820-239888)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 54435233 - 54435433
Alignment:
Q  1 ttgagaagaagaagagaggggcagtttggtcatttttcattgctcctttcgcaattgtttgagaagtcagggctatttttgtcagtttgcaacaactttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||||||||    
T  54435233 ttgagaagaagaagagaggggcagtttggtcatttttcattgctcctttcgcaattgtctgagaagttagggctatttttgtcggttcgcagcaactttt 54435332  T
Q  101 gctgagtcaaacaatcatttgaccaattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgatt 200  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||| || |||  ||||||||||| ||||||| ||||||||||||||| |||    
T  54435333 gctgagtcaaacaatcatttgaccaattaacagtgcgacgtcagctaattagtgatgtgttagtgattaagggggaagagggacgaaattttaaataatt 54435432  T
Q  201 a 201  Q
    |    
T  54435433 a 54435433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 16605762 - 16605693
Alignment:
Q  133 gtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||||| ||||||||||||||||||  ||  ||| |||||||||||||||||||||    
T  16605762 gtgccacgtcagctaattagtgacgtggcagtgattaagtggggggagggacgaaattttaaatgattaa 16605693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 14801895 - 14801827
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  14801895 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 14801827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 15507942 - 15508010
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| |||| |||||||||||||  || ||||||||||||||||||||||||||    
T  15507942 tgccacgtcatcaaattagtgacgcggcagtgattaagtggggagagagacgaaattttaaatgattaa 15508010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 35028267 - 35028335
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  35028267 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagtgacgaaattttaaatgattaa 35028335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 32950279 - 32950231
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||    
T  32950279 cgtggcagtgattaagtggggagagagacgaaattttaaatgattaaca 32950231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 34765649 - 34765717
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||  | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  34765649 tgccacgtcctcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 34765717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 52298165 - 52298117
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||    
T  52298165 gacgtggcagtgattaagtggggagagagacgaaattttaaatgattaa 52298117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 18831486 - 18831440
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||    
T  18831486 cgtggcagtgattaagtggggagagagacgaaattttaaatgattaa 18831440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 53701969 - 53701903
Alignment:
Q  136 ccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||| | |||||| ||||||||||||||||||  || |||| || ||||||||||||||||||    
T  53701969 ccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggaagaaattttaaatgattaa 53701903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 37976425 - 37976490
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| ||||||||||||||  || |||| |||||||||||||||||||||    
T  37976425 cacgtcatcaaattagtgacatggcagtgattaagtggggagagtgacgaaattttaaatgattaa 37976490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 41583520 - 41583569
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaac 203  Q
    ||||||||||||||||||   |||||| ||||||||||||||||||||||    
T  41583520 gacgtggcagtgattaagtgagaagagggacgaaattttaaatgattaac 41583569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 9145026 - 9145074
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  9145026 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 9145074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 24411517 - 24411449
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||| ||||||||||  ||||||| ||||||  |||||||||||||    
T  24411517 tgccacgtcatcaaattagtgacgtgggagtgattaagtgggaagagggacgaatctttaaatgattaa 24411449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 27934669 - 27934621
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  27934669 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 27934621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 35508509 - 35508577
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||  ||| ||||||||||||||  || ||||| ||||||||||||||||||||    
T  35508509 tgccacgtcatcaaattaatgacatggcagtgattaagtggggagagatacgaaattttaaatgattaa 35508577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 38012307 - 38012259
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || ||||||||||||||||||| ||||||||    
T  38012307 cgtggcagtgattaagtggggagagagacgaaattttaaacgattaaca 38012259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 42738291 - 42738339
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  42738291 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 42738339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 54086964 - 54087032
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| ||  ||||||||||  || ||||||||||||||||||||||||||    
T  54086964 tgccacgtcatcaaattagtgacatgttagtgattaagtggggagagagacgaaattttaaatgattaa 54087032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 56014886 - 56014815
Alignment:
Q  132 agtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaac 203  Q
    |||||||||||| | ||| || |||||||||||||||||    || ||| ||||||||||||||||||||||    
T  56014886 agtgccacgtcatcaaatcagtgacgtggcagtgattaactgtgatgagggacgaaattttaaatgattaac 56014815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 4982986 - 4983032
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  4982986 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 4983032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 13058174 - 13058128
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  13058174 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 13058128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 23613446 - 23613400
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  23613446 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 23613400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 24349819 - 24349765
Alignment:
Q  148 attagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||| |||||||||||||||||   || |||| |||||||||||||||||||||    
T  24349819 attagtgacgtggcagtgattaactggggagagggacgaaattttaaatgattaa 24349765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 36009104 - 36009150
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  36009104 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 36009150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 43155787 - 43155833
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  43155787 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 43155833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 49879467 - 49879513
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  49879467 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 49879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 54434346 - 54434280
Alignment:
Q  136 ccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||| ||||| |||||||||||||||||   ||| ||  |||| ||||||||||||||||    
T  54434346 ccacgtcagctgattagtgacgtggcagtgattaactgggatgaaggacgtaattttaaatgattaa 54434280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 16005970 - 16005929
Alignment:
Q  161 cagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||| ||| |||| |||||||||||||||||||||    
T  16005970 cagtgattaagtagggagagggacgaaattttaaatgattaa 16005929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 40387606 - 40387557
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaac 203  Q
    ||||||||||||||||||   ||||||  |||||||||||||||||||||    
T  40387606 gacgtggcagtgattaagtgagaagaggaacgaaattttaaatgattaac 40387557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 44967330 - 44967375
Alignment:
Q  157 gtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||  || |||| |||||||||||||||||||||    
T  44967330 gtggcagtgattaagtggggagagggacgaaattttaaatgattaa 44967375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 7280387 - 7280443
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| ||||||||||||||||||  || ||||||||  |||||||| |||||||    
T  7280387 taattagtgacgtggcagtgattaagtggggagagagacataattttaagtgattaa 7280443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 9400779 - 9400827
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| || ||||||||||||||||||||    
T  9400779 cgtggcagtgattaagtggggagagggatgaaattttaaatgattaaca 9400827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 16006076 - 16006143
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || | || ||| |||||||||||||||||    
T  16006076 tgccacgtcatcaaattagtgacgtggcagtgattaagttggtaaag-gactaaattttaaatgattaa 16006143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 17356204 - 17356256
Alignment:
Q  147 aattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgat 199  Q
    |||||| |||||| |||||||||||  || |||| ||||||||||||||||||    
T  17356204 aattagtgacgtgacagtgattaagtggggagagggacgaaattttaaatgat 17356256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 22566936 - 22566888
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| || ||||||||||||||||||||    
T  22566936 cgtggcagtgattaagtggggagagggatgaaattttaaatgattaaca 22566888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 23455650 - 23455698
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||| |||||||||| ||||||||||    
T  23455650 gacgtggcagtgattaatcgggaagagggacgaaatttgaaatgattaa 23455698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 33247533 - 33247581
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| || ||||||||||||||||||||    
T  33247533 cgtggcagtgattaagtggggagagggatgaaattttaaatgattaaca 33247581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 34837334 - 34837382
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  34837334 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 34837382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 35028157 - 35028089
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| |||||||| |||||||||  ||   | ||||||||||||||||||||||    
T  35028157 tgccacgtcatcaaattagtgacgtggcggtgattaagttggtcaaaagacgaaattttaaatgattaa 35028089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 52909412 - 52909344
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||| | |||||| ||| ||||||||||||||  || |||  |||||||||||||||||||||    
T  52909412 tgccacatcatcaaattagtgacatggcagtgattaagtggggagatggacgaaattttaaatgattaa 52909344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 55867403 - 55867451
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   |||| || |||||||||||||||||||||    
T  55867403 gacgtggcagtgattaactgggaatagggacgaaattttaaatgattaa 55867451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 6e-76; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5256148 - 5256351
Alignment:
Q  1 ttgagaagaagaagagaggggcagtttggtcatttttcattgctcctttcgcaattgtttgagaagtcagggctatttttgtcagtttgcaacaactttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| ||| ||| ||||||||    
T  5256148 ttgagaagaagaagagaggggcagtttggtcatttttcattggtcctttcgcaattgtctgagaagtcaggggtatttttgtccgttcgcatcaactttt 5256247  T
Q  101 gctgagtcaaacaatcatttgaccaattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgatt 200  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| ||||| | | |||||||||||||||||||    
T  5256248 tctgagtcaaacaatcatttgaccaattaatagcgccacgtcagctaattagtgacgtgacggtgattaatgaggatgtgggacgaaattttaaatgatt 5256347  T
Q  201 aaca 204  Q
    ||||    
T  5256348 aaca 5256351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 11047596 - 11047528
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| ||||||||||||||  || ||||||||||||||||||||||||||    
T  11047596 tgccacgtcatcaaattagtgacatggcagtgattaagtggggagagagacgaaattttaaatgattaa 11047528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 32242398 - 32242333
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  32242398 cacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 32242333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 19892577 - 19892645
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||  |||||||||||||||||||||    
T  19892577 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagaatgacgaaattttaaatgattaa 19892645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 22870423 - 22870471
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||    
T  22870423 gacgtggcagtgattaatcgggaagagagacgaaattttaaatgattaa 22870471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 5994045 - 5993980
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| ||||||||||||||  || |||| |||||||||||||||||||||    
T  5994045 cacgtcatcaaattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaa 5993980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 13963023 - 13962955
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaag-gaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| |||||| ||||||||||| ||||| ||| |||||||||||||||||||||    
T  13963023 tgccacgtcatcaaattagtgacgtgacagtgattaagtgagga-gagggacgaaattttaaatgattaa 13962955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 297274 - 297322
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  297274 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 297322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 6758125 - 6758173
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  6758125 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 6758173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 13362497 - 13362565
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| || || ||||||||||||  || |||||||| |||||||||||||||||    
T  13362497 tgccacgtcatcaaattagtgatgtagcagtgattaagtggggagagagactaaattttaaatgattaa 13362565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 14194692 - 14194760
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| | ||||||||||||  || |||| |||||||||||||||||||||    
T  14194692 tgccacgtcatcaaattagtgacatagcagtgattaagtggggagagggacgaaattttaaatgattaa 14194760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 38442227 - 38442159
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | ||||||  | |||||||||||||||  || |||| |||||||||||||||||||||    
T  38442227 tgccacgtcatcaaattagttatgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 38442159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 39453459 - 39453391
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| || |||||||||||  || |||| |||||||||||||||||||||    
T  39453459 tgccacgtcatcaaattagtgacatgccagtgattaagtggggagagggacgaaattttaaatgattaa 39453391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 41930653 - 41930605
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  41930653 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 41930605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 20814417 - 20814472
Alignment:
Q  147 aattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||| |||||||||||||| ||| |||| ||| |||||||||||||||||    
T  20814417 aattagtgacatggcagtgattaagtagggagagggacaaaattttaaatgattaa 20814472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 35512294 - 35512239
Alignment:
Q  147 aattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| || |||||||||||||||  || |||| |||||||||||||||||||||    
T  35512294 aattagtgatgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 35512239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 3529133 - 3529179
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  3529133 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 3529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 14848974 - 14849044
Alignment:
Q  133 gtgccacgtcagctaat-tagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||| ||| || |||||||||||||||  ||  ||| ||| |||||||||||||||||    
T  14848974 gtgccacgtcagctaatctagtgatgtggcagtgattaagtggggtgagggaccaaattttaaatgattaa 14849044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 31482664 - 31482710
Alignment:
Q  158 tggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||  || |||| |||||||||||||||||||||||    
T  31482664 tggcagtgattaagtggggagagggacgaaattttaaatgattaaca 31482710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 20857071 - 20857022
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaac 203  Q
    |||||||||||||||||   ||||||| |||||||||| |||||||||||    
T  20857071 gacgtggcagtgattaaccgggaagagggacgaaatttcaaatgattaac 20857022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 29646634 - 29646699
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| || |||||||||||  || |||| |||||||||||||||||||||    
T  29646634 cacgtcatcaaattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaa 29646699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 38475291 - 38475336
Alignment:
Q  157 gtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||  || |||| |||||||||||||||||||||    
T  38475291 gtggcagtgattaagtggggagagggacgaaattttaaatgattaa 38475336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 186578 - 186510
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| ||| ||||||||||  ||  ||| |||||||||||||||||||||    
T  186578 tgccacgtcatcaaattagtgacatggtagtgattaagtggggggagggacgaaattttaaatgattaa 186510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 1506104 - 1506056
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  1506104 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 1506056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 18247243 - 18247175
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| |||| |||||||||  || |||| ||||||||| |||||||||||    
T  18247243 tgccacgtcatcaaattagtgacatggcggtgattaagtggggagagggacgaaattctaaatgattaa 18247175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 22869744 - 22869696
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||| |||||||||||||||| ||||    
T  22869744 gacgtggcagtgattaaccgggaagagggacgaaattttaaatggttaa 22869696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 24547414 - 24547462
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||| |||||  || |||| |||||||||||||||||||||    
T  24547414 gacgtggcagtggttaagtggggagagggacgaaattttaaatgattaa 24547462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 28269681 - 28269725
Alignment:
Q  158 tggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||  || |||| |||||||||||||||||||||    
T  28269681 tggcagtgattaagtggggagagggacgaaattttaaatgattaa 28269725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 28771131 - 28771175
Alignment:
Q  158 tggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||  || |||| |||||||||||||||||||||    
T  28771131 tggcagtgattaagtggggagagggacgaaattttaaatgattaa 28771175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 25893413 - 25893555
Alignment:
Q  60 tgagaagtcagggctatttttgtcagtttgcaacaacttttgctgagtcaaacaatcatttgaccaattaatagtgccacgtcagctaattagagacgtg 159  Q
    ||||||||||| | |||||||||||||| ||| ||| |||||| |||||||||| ||||||||| |||||| || |||||||||||||||||| ||||||    
T  25893413 tgagaagtcagtggtatttttgtcagttcgcatcaatttttgccgagtcaaacagtcatttgactaattaacagcgccacgtcagctaattagggacgtg 25893512  T
Q  160 gcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||| || ||||| ||||| ||||||||||||||    
T  25893513 gcagtgattaaggggggagagaaacgaatttttaaatgattaa 25893555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 6573740 - 6573634
Alignment:
Q  94 aacttttgctgagtcaaacaatcatttgaccaattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaatttta 193  Q
    |||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||  ||| ||| || |||||    
T  6573740 aacttttgctgagtcaaacagtcatttgaccaattaacagcgccacgtcagctaattagggacgtggcagtgattaaggggg--gagggacaaattttta 6573643  T
Q  194 aatgattaa 202  Q
    |||||||||    
T  6573642 aatgattaa 6573634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 25892554 - 25892485
Alignment:
Q  133 gtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| |||||||||||||||||||| ||| ||||||  || |||| |||||| ||||||||||||||    
T  25892554 gtgccacatcagctaattagagacgtggtagtaattaagtggggagagggacgaatttttaaatgattaa 25892485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 36755249 - 36755184
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| |||||| |||||||||||  || ||||||||||||||||||||||||||    
T  36755249 cacgtcatcaaattagtgacgtgacagtgattaagtggggagagagacgaaattttaaatgattaa 36755184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 37895619 - 37895684
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  37895619 cacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 37895684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 15848247 - 15848179
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  15848247 tgccacatcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 15848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 36382320 - 36382252
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||| || ||||||||||||||||||    
T  36382320 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggatgaaattttaaatgattaa 36382252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 39423674 - 39423606
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| ||||||||||||||  || |||| |||||||||||||||||||||    
T  39423674 tgccacgtcatcaaattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaa 39423606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 11347569 - 11347514
Alignment:
Q  147 aattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||||||||| |||||||  ||| ||||||||||||||||||||||||||    
T  11347569 aattagcgacgtggcactgattaattagggagagagacgaaattttaaatgattaa 11347514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 6577545 - 6577614
Alignment:
Q  133 gtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| ||| |||||||| ||||||||||||||||||  ||||||| |||| | |||||||| |||||    
T  6577545 gtgccacatcaactaattagtgacgtggcagtgattaagtgggaagagggacggatttttaaataattaa 6577614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 6846954 - 6846877
Alignment:
Q  123 ccaattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgatt 200  Q
    |||||||| |||||||| ||| | |||||   |||||||||| ||||||  ||||||| |||||||||||||||||||    
T  6846954 ccaattaacagtgccacatcatcaaattactaacgtggcagtaattaagtgggaagagggacgaaattttaaatgatt 6846877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 10840624 - 10840567
Alignment:
Q  145 ctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||| |||||| |||||||||||  ||||||| ||||||| |||||||||||||    
T  10840624 ctaattagtgacgtgacagtgattaagtgggaagagggacgaaagtttaaatgattaa 10840567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 44714033 - 44714098
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| ||||||||||||||  || |||| |||||||||||||||||||||    
T  44714033 cacgtcatcaaattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaa 44714098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 10712882 - 10712814
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||| ||||||||||  || |||| || ||||||||||||||||||    
T  10712882 tgccacgtcatcaaattagtgacgtggtagtgattaagtggggagagggatgaaattttaaatgattaa 10712814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 11721371 - 11721427
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| |||||| |||||||||||  || |||||||||||||||||| |||||||    
T  11721371 taattagtgacgtgacagtgattaagtggggagagagacgaaattttaagtgattaa 11721427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 14900743 - 14900791
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  14900743 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 14900791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 33739840 - 33739792
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  33739840 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 33739792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 3653363 - 3653417
Alignment:
Q  148 attagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||| ||||||| |||||||||   ||||||| |||||||||||||||||||||    
T  3653363 attagtgacgtggtagtgattaacttggaagagggacgaaattttaaatgattaa 3653417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 6658015 - 6657969
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  6658015 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 6657969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 16099192 - 16099146
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  16099192 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 16099146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 39498447 - 39498401
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  39498447 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 39498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 2318314 - 2318249
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||||||||| | ||||||  || |||| |||||||||||||||||||||    
T  2318314 cacgtcatcaaattagtgacgtggcattaattaagtggggagagggacgaaattttaaatgattaa 2318249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 11349477 - 11349542
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||| | |||||||||| |||||||   ||  ||| |||||||||||||||||||||    
T  11349477 cacgtcagctaatcaaagacgtggcactgattaactgggttgagggacgaaattttaaatgattaa 11349542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 22051266 - 22051330
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||  |||||||||||| || || ||||||||||||||||||||||||||    
T  22051266 cacgtcatcaaattagtgatatggcagtgatta-ggtgggagagagacgaaattttaaatgattaa 22051330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 36479874 - 36479809
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| ||||||||||||||  || |||  |||||||||||||||||||||    
T  36479874 cacgtcatcaaattagtgacatggcagtgattaagtggggagatggacgaaattttaaatgattaa 36479809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 11163316 - 11163360
Alignment:
Q  158 tggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||  || |||| |||||||||||||||||||||    
T  11163316 tggcagtgattaagtggggagagggacgaaattttaaatgattaa 11163360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 11689688 - 11689632
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| ||||||||||||||||||  || |||  ||||||||||||| |||||||    
T  11689688 taattagtgacgtggcagtgattaagtggggagatggacgaaattttaagtgattaa 11689632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 13995933 - 13995981
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  13995933 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 13995981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 25623427 - 25623379
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   || |||| |||||||||||||||||||||    
T  25623427 gacgtggcagtgattaaccgggtagagggacgaaattttaaatgattaa 25623379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 33062310 - 33062358
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| ||||||||| |||||||||||||    
T  33062310 cgtggcagtgattaagtggggagagggacgaaattataaatgattaaca 33062358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 41248819 - 41248867
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  41248819 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 41248867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 45556247 - 45556203
Alignment:
Q  158 tggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||| ||| |||| ||| |||||||||||||||||    
T  45556247 tggcagtgattaagtagggagagggacaaaattttaaatgattaa 45556203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 33156263 - 33156331
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||||| ||||||||||||||||||  ||  ||| |||||||||||||||||||||    
T  33156263 tgccacgtcagctaattagtgacgtggcagtgattaagtggggggagggacgaaattttaaatgattaa 33156331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 33689648 - 33689716
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  33689648 tgccacgtcatcgaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 33689716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 54317914 - 54317968
Alignment:
Q  148 attagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||| |||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  54317914 attagtgacgtggcagtgattaattagggagagagacgaaattttaaatgattaa 54317968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 40758303 - 40758235
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||| ||||||||||  || |||| |||||||||||||||||||||    
T  40758303 tgccacgtcatcaaattagtgacgtggtagtgattaagtggggagagggacgaaattttaaatgattaa 40758235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 43384442 - 43384374
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| || |||||||||||  || ||||||||||||||||||||||||||    
T  43384442 tgccacgtcatcaaattagtgacatgacagtgattaagtggggagagagacgaaattttaaatgattaa 43384374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 25108362 - 25108433
Alignment:
Q  132 agtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaac 203  Q
    |||||||||||||||||| || |||||||||||||||||    || ||  ||||||||||||||||||||||    
T  25108362 agtgccacgtcagctaatcagtgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgattaac 25108433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 9367910 - 9367832
Alignment:
Q  124 caattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| | |||||| |||||||||||||||||   ||| ||| |||||||||||||||||||||    
T  9367910 caattaacaatgccacctcatcaaattagtgacgtggcagtgattaattgggatgagggacgaaattttaaatgattaa 9367832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 23458251 - 23458316
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| || |||||||||||||||  || |||| |||||||||||||||||||||    
T  23458251 cacgtcatcaaattagtgatgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 23458316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 8041753 - 8041705
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  8041753 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 8041705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 9294227 - 9294295
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| || |||||||||||  || |||| |||||||||||||||||||||    
T  9294227 tgccacgtcatcaaattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaa 9294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 10770751 - 10770799
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  10770751 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 10770799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 25107370 - 25107302
Alignment:
Q  136 ccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    |||||||||||||| |  |||||||||||||||||    || ||| |||||||||||||||||||||||    
T  25107370 ccacgtcagctaatcactgacgtggcagtgattaactgtgatgagggacgaaattttaaatgattaaca 25107302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 26463867 - 26463935
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||| |||| | |||||| |||||| |||||||||||  || |||| |||||||||||||||||||||    
T  26463867 tgccatgtcatcaaattagtgacgtgacagtgattaagtggggagagggacgaaattttaaatgattaa 26463935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 29192174 - 29192126
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||| |||||||||||||||||||||    
T  29192174 gacgtggcagtgattaatcgggaagagggacgaaattttaaatgattaa 29192126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 36314558 - 36314606
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  36314558 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 36314606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 41988108 - 41988053
Alignment:
Q  147 aattagagacgtggcagtgattaag-gaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| || ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  41988108 aattagtgatgtggcagtgattaagtgagga-gagagacgaaattttaaatgattaa 41988053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 48322637 - 48322685
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  48322637 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 48322685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 51994175 - 51994223
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  51994175 gacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 51994223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 54466560 - 54466512
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  54466560 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 54466512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 2796316 - 2796270
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  2796316 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 2796270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 19741183 - 19741229
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  19741183 cgtggcagtgattaagtggggagagtgacgaaattttaaatgattaa 19741229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 39399375 - 39399429
Alignment:
Q  148 attagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||| |||||||||||||||||   || ||||||| ||||||||||||||||||    
T  39399375 attagtgacgtggcagtgattaactggggagagagatgaaattttaaatgattaa 39399429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 42854592 - 42854526
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||  || |||||||||||||||  |  ||||||||||||||||||||||||||    
T  42854592 tgccacgtcatcaaattactgaggtggcagtgattaagtgg--agagagacgaaattttaaatgattaa 42854526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 3850416 - 3850464
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||  |||| ||| |||||||||||||| ||||||    
T  3850416 gacgtggcagtgattaacaaggatgagggacgaaattttaaacgattaa 3850464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 20704608 - 20704664
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| |||||| | |||||||||  ||||||| ||||||||||||| |||||||    
T  20704608 taattagtgacgtgactgtgattaagtgggaagagggacgaaattttaagtgattaa 20704664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 30380993 - 30380937
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| |||||||||||||| |||  |  |||| |||||||||||||||||||||    
T  30380993 taattagtgacgtggcagtgatcaagtggacagagggacgaaattttaaatgattaa 30380937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 32716388 - 32716340
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||| |||||||||||||||| ||||    
T  32716388 gacgtggcagtgattaatctggaagagggacgaaattttaaatggttaa 32716340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 32717066 - 32717114
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||| |||||   ||||||| |||||||||||||||||||||    
T  32717066 gacgtggcagtaattaattgggaagagggacgaaattttaaatgattaa 32717114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 4960699 - 4960631
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  4960699 tgccacgtcatcaaattagtgacgtggcagtgattaagtgggaagagggacgaaattttaaatgattaa 4960631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 17662119 - 17662187
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||| | |||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  17662119 tgccacttcatcaaattagtgacgtggcagtgattaagtgggaagagggacgaaattttaaatgattaa 17662187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 27999120 - 27999188
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||||| |||||| || |||||||||||||||  |||||||||||||||||| ||||||||||    
T  27999120 tgccacatcagcaaattagtgaggtggcagtgattaagtgggaagagagacgaaatttaaaatgattaa 27999188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 34850334 - 34850402
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||| || ||||||||||||||||||  || |||| || ||||||||||||||||||    
T  34850334 tgccacgtcagctaatcagtgacgtggcagtgattaagtggggagagggatgaaattttaaatgattaa 34850402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 37578461 - 37578529
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  37578461 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagtgacgaaattttaaatgattaa 37578529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 6367718 - 6367653
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  6367718 cacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 6367653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 4716728 - 4716776
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||    
T  4716728 cgtggcagtgattaagtggggagagagacgaaattttaaatgattaaca 4716776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 24009810 - 24009878
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| || |||||||||||||||  || |||| |||||||||||||||||||||    
T  24009810 tgccacgtcatcaaattagtgatgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 24009878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 32917419 - 32917351
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||  | |||||| || |||||||||||||||  || ||||||||||||||||||||||||||    
T  32917419 tgccacgtcgtcaaattagtgatgtggcagtgattaagtggggagagagacgaaattttaaatgattaa 32917351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 40210639 - 40210707
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | | |||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  40210639 tgccacgtcatcaatttagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 40210707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 25065880 - 25065967
Alignment:
Q  115 tcatttgaccaattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| || ||| ||||| ||||||||||||||| || || |||||||||||||||  |  |||| |||||||| ||||||||||||    
T  25065880 tcatttaacaaataaatagagccacgtcagctaatcagtgaggtggcagtgattaagtggagagagggacgaaatcttaaatgattaa 25065967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 44523404 - 44523442
Alignment:
Q  133 gtgccacgtcagctaattagagacgtggcagtgattaag 171  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  44523404 gtgccacgtcagctaattagtgacgtggcagtgattaag 44523442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 10304147 - 10304192
Alignment:
Q  157 gtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  10304147 gtggcagtgattaagtggggagagagacgaaattttaaatgattaa 10304192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 13914339 - 13914404
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||||||||||||||| ||  || |||| |||||||||||||||||||||    
T  13914339 cacgtcatcaaattagtgacgtggcagtgatttagtggggagagggacgaaattttaaatgattaa 13914404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 14879130 - 14879062
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| || |||||||||||  || |||| |||||||||||||||||||||    
T  14879130 tgccacgtcatcaaattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaa 14879062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 24905427 - 24905475
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  24905427 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 24905475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 28011500 - 28011452
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  28011500 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 28011452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 33442854 - 33442902
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  33442854 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 33442902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 34849150 - 34849102
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  34849150 gacgtggcagtgattaagaggggagagggacgaaattttaaatgattaa 34849102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 36694541 - 36694585
Alignment:
Q  158 tggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||  || ||||||||||||||||||||||||||    
T  36694541 tggcagtgattaagtggggagagagacgaaattttaaatgattaa 36694585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 36710642 - 36710686
Alignment:
Q  158 tggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||  || ||||||||||||||||||||||||||    
T  36710642 tggcagtgattaagtggggagagagacgaaattttaaatgattaa 36710686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 42248632 - 42248564
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||| | ||||||  |||||||||||||||||  || |||| |||||||||||||||||||||    
T  42248632 tgccacatcaacaaattagtcacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 42248564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 42267450 - 42267394
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| ||||||| ||||||||||  || ||||||||||||| ||||||||||||    
T  42267450 taattagtgacgtggtagtgattaagtggggagagagacgaaatattaaatgattaa 42267394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 43758981 - 43758913
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| ||||||||||||||  |  |||| |||||||||||||||||||||    
T  43758981 tgccacgtcatcaaattagtgacatggcagtgattaagtggagagagggacgaaattttaaatgattaa 43758913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 46163189 - 46163121
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| || |||| ||||||  || ||||||||||||||||||||||||||    
T  46163189 tgccacgtcatcaaattagtgacatgacagtaattaagtggggagagagacgaaattttaaatgattaa 46163121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 1841605 - 1841550
Alignment:
Q  147 aattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||| ||||||||||||||  || |||| |||||||||||||||||||||    
T  1841605 aattagtgacatggcagtgattaagtggggagagtgacgaaattttaaatgattaa 1841550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 183482 - 183528
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  183482 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 183528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 25648021 - 25647975
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  25648021 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 25647975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 31514577 - 31514623
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  31514577 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 31514623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 10304059 - 10304014
Alignment:
Q  157 gtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||  || |||| |||||||||||||||||||||    
T  10304059 gtggcagtgattaagtggggagagggacgaaattttaaatgattaa 10304014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 19017901 - 19017966
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| || | |||||||||||||  ||||||| ||| |||||||||||||||||    
T  19017901 cacgtcatcaaattagtgatgcggcagtgattaagtgggaagagggacaaaattttaaatgattaa 19017966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 34464721 - 34464786
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| ||||||||||||||  || |||| ||| |||||||||||||||||    
T  34464721 cacgtcatcaaattagtgacatggcagtgattaagtggggagagggacaaaattttaaatgattaa 34464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 1103620 - 1103552
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||| | |||||| ||| || |||||||||||  || |||| |||||||||||||||||||||    
T  1103620 tgccacatcatcaaattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaa 1103552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 13295274 - 13295226
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||| ||||| |||||||||||||||    
T  13295274 gacgtggcagtgattaaccgggaagagggacgacattttaaatgattaa 13295226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 21444741 - 21444685
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| ||||||||||||||||||  || |||  ||||||||||||| |||||||    
T  21444741 taattagtgacgtggcagtgattaagtggggagatggacgaaattttaagtgattaa 21444685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 22103787 - 22103843
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| ||||||||||||||||||  |  |||| ||||||||||||| |||||||    
T  22103787 taattagtgacgtggcagtgattaagtggagagagggacgaaattttaagtgattaa 22103843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 30711486 - 30711418
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||  | |||||| ||| ||||||||||||||  ||  ||| |||||||||||||||||||||    
T  30711486 tgccacgtcgtcaaattagtgacatggcagtgattaagtggggcgagggacgaaattttaaatgattaa 30711418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 52134205 - 52134157
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  52134205 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 52134157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 37832 - 37900
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  37832 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 37900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 13186219 - 13186151
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||   |||||| ||||||||||||||||||  || ||||||||||||||||||||||||||    
T  13186219 tgccacgtcattaaattagtgacgtggcagtgattaagtggggagagagacgaaattttaaatgattaa 13186151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 16388795 - 16388863
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  16388795 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 16388863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 36928632 - 36928567
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  36928632 cacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 36928567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 4405929 - 4405997
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||  | |||||| |||||| |||||||||||  ||||||| |||||||||||||||||||||    
T  4405929 tgccacgtcttcaaattagtgacgtgacagtgattaagtgggaagagggacgaaattttaaatgattaa 4405997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 35756741 - 35756673
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| ||||||||||||||  || |||| |||||||||||||||||||||    
T  35756741 tgccacgtcatcaaattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaa 35756673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 31608782 - 31608849
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgatta 201  Q
    ||||||| || | |||||| ||||||||||||||||||  || |||| ||||||||||||||||||||    
T  31608782 tgccacgccatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgatta 31608849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 12199211 - 12199256
Alignment:
Q  157 gtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  12199211 gtggcagtgattaagtggggagagagacgaaattttaaatgattaa 12199256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 12443639 - 12443684
Alignment:
Q  157 gtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||  || ||||||||||||||||||||||||||    
T  12443639 gtggcagtgattaagtggggagagagacgaaattttaaatgattaa 12443684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 36186359 - 36186404
Alignment:
Q  157 gtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||    
T  36186359 gtggcagtgattaagtagggagagggacgaaattttaaatgattaa 36186404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 3041716 - 3041764
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  3041716 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 3041764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 36325371 - 36325323
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  36325371 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 36325323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 38845559 - 38845607
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  38845559 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 38845607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 39071835 - 39071767
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||  | |||||| |||| |||||||||||||  || |||| |||||||||||||||||||||    
T  39071835 tgccacgtcgtcaaattagtgacgcggcagtgattaagtggggagagggacgaaattttaaatgattaa 39071767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 40775910 - 40775958
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  40775910 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 40775958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 44407117 - 44407165
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  44407117 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 44407165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 12273147 - 12273190
Alignment:
Q  159 ggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||  ||||||| |||||||||||||||||||||    
T  12273147 ggcagtgattaagtgggaagagggacgaaattttaaatgattaa 12273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 1425313 - 1425359
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  1425313 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 1425359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 23663805 - 23663851
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  23663805 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 23663851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 38862754 - 38862709
Alignment:
Q  157 gtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||  || |||| |||||||||||||||||||||    
T  38862754 gtggcagtgattaagtggggagagggacgaaattttaaatgattaa 38862709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 40318233 - 40318301
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaag-gaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| |||||||||||||| |||| |||  |||||||||||||||||||||    
T  40318233 tgccacgtcatcaaattagtgacatggcagtgattaagtgagg-agaaggacgaaattttaaatgattaa 40318301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 2266629 - 2266581
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  2266629 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 2266581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 11674831 - 11674784
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  ||| ||| |||||||||||||||||||||||    
T  11674831 cgtggcagtgattaagtggga-gagggacgaaattttaaatgattaaca 11674784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 31873168 - 31873236
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| || || ||||||||||||  |||||||  || |||||||||||||||||    
T  31873168 tgccacgtcatcaaattagtgatgtagcagtgattaagtgggaagaggaacaaaattttaaatgattaa 31873236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 5457176 - 5457244
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||| || |||||||||||||||||   ||| ||| |||||||||||||||||||||    
T  5457176 tgccacgtcagctaatcagtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaa 5457244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 3914294 - 3914229
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| || |||||||||||||||  ||||||| |||||||||||||||||||||    
T  3914294 cacgtcatcaaattagtgatgtggcagtgattaagttggaagagggacgaaattttaaatgattaa 3914229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 45010892 - 45010941
Alignment:
Q  153 agacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||    
T  45010892 agacgtggcagtgattaagtggggagagagacgaaattttaaatgattaa 45010941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 2640447 - 2640515
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| || |||||||||||  || ||||||||||||||||||||||||||    
T  2640447 tgccacgtcatcaaattagtgacatgacagtgattaagtggggagagagacgaaattttaaatgattaa 2640515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 28469277 - 28469345
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||| ||||||||||  || |||| |||||||||||||||||||||    
T  28469277 tgccacgtcatcaaattagtgacgtggtagtgattaagtggggagagggacgaaattttaaatgattaa 28469345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 40379928 - 40379860
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||| ||||||||  || |||| |||||||||||||||||||||    
T  40379928 tgccacgtcatcaaattagtgacgtggcattgattaagtggggagagggacgaaattttaaatgattaa 40379860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 45915749 - 45915817
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||| || |||||||||||||||||   | ||||| |||| ||||||||||||||||    
T  45915749 tgccacgtcagctaatcagtgacgtggcagtgattaatcggaaagagggacggaattttaaatgattaa 45915817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 11397531 - 11397469
Alignment:
Q  140 gtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||| |||||| ||||||||||   ||| ||||||| |||||||||||||||||    
T  11397531 gtcagctaattagtgacgtgacagtgattaattgggatgagagactaaattttaaatgattaa 11397469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 42731575 - 42731510
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| ||||||||||||||  || |||| |||||||||||||||||||||    
T  42731575 cacgtcatcaaattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaa 42731510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 10935953 - 10935885
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| ||||||||||||||  |  |||| |||||||||||||||||||||    
T  10935953 tgccacgtcatcaaattagtgacatggcagtgattaagtggagagagggacgaaattttaaatgattaa 10935885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 12644094 - 12644142
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||| |||||||||||||||||||||    
T  12644094 gacgtggcagtgattaaccgggaagagggacgaaattttaaatgattaa 12644142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 27396884 - 27396932
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  27396884 gacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 27396932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 30948420 - 30948468
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  30948420 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 30948468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 32053412 - 32053480
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||| |||| | |||||| |||||| |||||||||||  || |||| |||||||||||||||||||||    
T  32053412 tgccatgtcatcaaattagtgacgtgacagtgattaagtggggagagggacgaaattttaaatgattaa 32053480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 32680855 - 32680903
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  32680855 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 32680903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 45914663 - 45914615
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||| |||||||||||||||||||||    
T  45914663 gacgtggcagtgattaatcgggaagagggacgaaattttaaatgattaa 45914615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 20426588 - 20426667
Alignment:
Q  123 ccaattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||  ||||||||||||||||||  | |||||||||||| || ||  ||| ||| ||| |||||||||||||||||    
T  20426588 ccaattagcagtgccacgtcagctaatcggtgacgtggcagtggtttagtgggatgagggactaaattttaaatgattaa 20426667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 42019868 - 42019934
Alignment:
Q  136 ccacgtcagctaattagagacgtggcagtgattaag-gaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||| | |||||| ||| |||||||||||||| |||| |||||||||||||||||||| |||||    
T  42019868 ccacgtcatcaaattagtgacatggcagtgattaagtgagg-agagagacgaaattttaaataattaa 42019934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 17102157 - 17102111
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  17102157 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 17102111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 27991876 - 27991830
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  27991876 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 27991830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 4226264 - 4226216
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||  |||||||||||||||||||||    
T  4226264 gacgtggcagtgattaaccgggaagaaggacgaaattttaaatgattaa 4226216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 12643239 - 12643191
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||||||| |||||||||||||||| ||||    
T  12643239 gacgtggcagtgattaatcgggaagagggacgaaattttaaatggttaa 12643191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 23181263 - 23181331
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| || |||||||||||  |  |||| |||||||||||||||||||||    
T  23181263 tgccacgtcatcaaattagtgacatgacagtgattaagtggagagagggacgaaattttaaatgattaa 23181331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 24388978 - 24388910
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||| | || |||||||||||||||  || |||| ||||||||||||| |||||||    
T  24388978 tgccacgtcatcaaattggtgatgtggcagtgattaagtggggagagggacgaaattttaagtgattaa 24388910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 34928910 - 34928958
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  34928910 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 34928958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 39686794 - 39686842
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  39686794 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 39686842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 43124441 - 43124489
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   |||| || |||||||||||||||||||||    
T  43124441 gacgtggcagtgattaactgggaatagggacgaaattttaaatgattaa 43124489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 33647122 - 33647054
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| |||||||||||||||||   || ||||||||||||||||||||||||||    
T  33647122 tgccacgtcatcaaattagtgacgtggcagtgattaaatggggagagagacgaaattttaaatgattaa 33647054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 21627982 - 21628050
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  || |||| ||| |||||||||||||||||    
T  21627982 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacaaaattttaaatgattaa 21628050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 33517693 - 33517625
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||| ||||||||||||  || |||| |||||||||||||||||||||    
T  33517693 tgccacgtcatcaaattagtgacgtagcagtgattaagtggggagagggacgaaattttaaatgattaa 33517625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 140993 - 141077
Alignment:
Q  118 tttgaccaattaatagtgccacgtcagctaattagagacgtggcagtgatt-aaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||| |||||||||||||| |||||||||||| || |||||| ||||||||  | || || |||||| ||||||||||||||||||    
T  140993 tttggccaattaatagtgcaacgtcagctaatcagtgacgtgacagtgattggatga-gatgagagatgaaattttaaatgattaa 141077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 149014 - 149098
Alignment:
Q  118 tttgaccaattaatagtgccacgtcagctaattagagacgtggcagtgatt-aaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||| |||||||||||||| |||||||||||| || |||||| ||||||||  | || || |||||| ||||||||||||||||||    
T  149014 tttggccaattaatagtgcaacgtcagctaatcagtgacgtgacagtgattggatga-gatgagagatgaaattttaaatgattaa 149098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 11392994 - 11392929
Alignment:
Q  137 cacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| | |||||| ||| ||||||||||||||  || ||| ||||||||||||||||||||||    
T  11392994 cacgtcatcaaattagtgacatggcagtgattaagttgggagatagacgaaattttaaatgattaa 11392929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 12080795 - 12080727
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| ||| | |||||| ||| ||||||||||||||  || |||| |||||||||||||||||||||    
T  12080795 tgccacatcatcaaattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaa 12080727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 28000645 - 28000693
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  28000645 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 28000693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 30725918 - 30725850
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||| |||||||||||||   || |||| |||||||||||||||||||||    
T  30725918 tgccacgtcatcaaattagtgacatggcagtgattaaatggggagagggacgaaattttaaatgattaa 30725850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 30804020 - 30803952
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||  ||||||||||||||  || |||| |||||||||||||||||||||    
T  30804020 tgccacgtcatcaaattagtgagatggcagtgattaagtggggagagggacgaaattttaaatgattaa 30803952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 30337586 - 30337539
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaac 203  Q
    ||||||||||||||||  || |||| ||||||||||||||||||||||    
T  30337586 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaac 30337539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 3059416 - 3059348
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaag-gaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| |  ||||| ||| |||||||||||||| ||||| ||| |||||||||||||||||||||    
T  3059416 tgccacgtcatcacattagtgacatggcagtgattaagtgagga-gagggacgaaattttaaatgattaa 3059348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 363090 - 363138
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||| ||||||||    
T  363090 cgtggcagtgattaagtggggagagggacgaaattttaaacgattaaca 363138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 1215147 - 1215203
Alignment:
Q  146 taattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||| ||||||||||||||||||  || | || ||||||||||||| |||||||    
T  1215147 taattagtgacgtggcagtgattaagtggggatagggacgaaattttaagtgattaa 1215203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 12407667 - 12407599
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||| |||||||||| ||||||||||| |||||  |||   || ||| |||||||||||||||||    
T  12407667 tgccacgtgagctaattagtgacgtggcagtaattaactaggttcagggaccaaattttaaatgattaa 12407599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 14196875 - 14196923
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| | |||||||||||||||||||||    
T  14196875 cgtggcagtgattaagtggggagaggggcgaaattttaaatgattaaca 14196923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 26463318 - 26463270
Alignment:
Q  154 gacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||||   ||| ||| |||||||||||||||||||||    
T  26463318 gacgtggcagtgattaactgggatgagggacgaaattttaaatgattaa 26463270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 14515 - 14602
Alignment:
Q  115 tcatttgaccaattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| |||||| || || ||||||||||||||| || || |||||||||||||||  || |||| |||||||| ||||||||||||    
T  14515 tcatttaaccaataaacagagccacgtcagctaatcagtgatgtggcagtgattaagtggggagagggacgaaatcttaaatgattaa 14602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 69120 - 69056
Alignment:
Q  138 acgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||| | |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||    
T  69120 acgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 69056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 23401 - 23322
Alignment:
Q  123 ccaattaatagtgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||| || ||||||||||| |||||  ||||||||||||||||||  ||  |||| || |||||||||||||||||    
T  23401 ccaattaacagagccacgtcagcaaattactgacgtggcagtgattaagtggggggagaaaccaaattttaaatgattaa 23322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 1370 - 1322
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  1370 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 141854 - 141902
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  141854 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaca 141902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 139809 - 139763
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  139809 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 139763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 1906 - 1860
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  1906 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 1860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 2302 - 2234
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||  ||| ||||||||||||||  || |||| ||| |||||||||||||||||    
T  2302 tgccacgtcatcaaattattgacatggcagtgattaagtggggagagggacaaaattttaaatgattaa 2234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 21229 - 21277
Alignment:
Q  156 cgtggcagtgattaaggaggaagagagacgaaattttaaatgattaaca 204  Q
    ||||||||||||||||  || |||| |||| ||||||||||||||||||    
T  21229 cgtggcagtgattaagtggggagagggacggaattttaaatgattaaca 21277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 14588 - 14520
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||| | |||||| ||||||||||||||||||  ||   | |||| |||||||||||||||||    
T  14588 tgccacgtcatcaaattagtgacgtggcagtgattaagttggtcaaaagacaaaattttaaatgattaa 14520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 239820 - 239888
Alignment:
Q  134 tgccacgtcagctaattagagacgtggcagtgattaaggaggaagagagacgaaattttaaatgattaa 202  Q
    |||||||||||||||| || || |||||||| ||||||  ||   || |||||||||||||||||||||    
T  239820 tgccacgtcagctaatcagtgatgtggcagtaattaagtgggtgtagggacgaaattttaaatgattaa 239888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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