View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_low_4 (Length: 499)
Name: NF11501_low_4
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 31658968 - 31658583
Alignment:
| Q |
1 |
acttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacattccaatta |
100 |
Q |
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| T |
31658968 |
acttgcaaaagttatttgcattcagatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaacattccaatta |
31658869 |
T |
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| Q |
101 |
aagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatca |
200 |
Q |
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| T |
31658868 |
aagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattcttctcaaaatca |
31658769 |
T |
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| Q |
201 |
attgttctcatcagataacctcatatcatgtaactttgaattttgttttgattatttgagacatgccactatgctatcatcgattgaatcatttgaattt |
300 |
Q |
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| T |
31658768 |
attgttctcatcagataacctcatatcatgtaactttgaagtttattttgattatttgagacgtgccactatgctatcatcgattgaatcatttgaattt |
31658669 |
T |
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| Q |
301 |
gagaatgtttatgaccagttaggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
386 |
Q |
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| T |
31658668 |
gagaatgtttatgaccagttaggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
31658583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 306
Target Start/End: Original strand, 31650298 - 31650553
Alignment:
| Q |
57 |
tgactcttctatattactcagttttgataa---caacattccaattaaagaagaaaactcgtttccaccatcacc---attgccatttcttgcatctaca |
150 |
Q |
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| T |
31650298 |
tgactcttcaatattacttagtttcgataataacaacatttcaaataaacaagaatatccatttcgaccatcaccaccattgccacttcttgcatctaca |
31650397 |
T |
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| Q |
151 |
atagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataacctcatatcatgtaactttgaattttgttttg |
250 |
Q |
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| T |
31650398 |
aaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctcaccggagaatctccaattatgcgattttgatgtttattttg |
31650497 |
T |
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| Q |
251 |
attatttgagacatgccactatgctatcatcgattgaatcatttgaatttgagaat |
306 |
Q |
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| T |
31650498 |
attatttgagacatgtcagtgagtcatcatcgagtgaatctttttaatttgagaat |
31650553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 31657250 - 31657342
Alignment:
| Q |
1 |
acttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacatt |
93 |
Q |
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| T |
31657250 |
acttgcaaaagctcttaccattcagacataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
129 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
173 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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