View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11501_low_5 (Length: 486)

Name: NF11501_low_5
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11501_low_5
NF11501_low_5
[»] chr8 (3 HSPs)
chr8 (67-477)||(8546247-8546658)
chr8 (18-60)||(37562301-37562343)
chr8 (16-68)||(38572220-38572272)
[»] scaffold0164 (3 HSPs)
scaffold0164 (104-452)||(18999-19344)
scaffold0164 (83-353)||(32311-32579)
scaffold0164 (83-190)||(14198-14306)
[»] chr6 (2 HSPs)
chr6 (15-66)||(34034168-34034219)
chr6 (15-67)||(34035041-34035093)
[»] chr2 (4 HSPs)
chr2 (15-67)||(38780061-38780113)
chr2 (15-60)||(34617659-34617704)
chr2 (17-60)||(6084877-6084920)
chr2 (20-68)||(14565214-14565262)
[»] chr4 (6 HSPs)
chr4 (15-66)||(22499971-22500022)
chr4 (15-67)||(22499097-22499149)
chr4 (16-59)||(30808628-30808671)
chr4 (16-60)||(33370873-33370917)
chr4 (17-53)||(34371475-34371511)
chr4 (15-59)||(38009291-38009335)
[»] chr7 (4 HSPs)
chr7 (17-62)||(40257471-40257516)
chr7 (17-60)||(29060738-29060781)
chr7 (17-60)||(42607087-42607130)
chr7 (18-62)||(24996683-24996727)
[»] scaffold0039 (1 HSPs)
scaffold0039 (16-69)||(32888-32941)
[»] chr5 (2 HSPs)
chr5 (15-62)||(35262456-35262503)
chr5 (15-60)||(4789526-4789571)
[»] chr3 (2 HSPs)
chr3 (17-60)||(49161807-49161850)
chr3 (17-69)||(33454863-33454915)
[»] chr1 (7 HSPs)
chr1 (16-59)||(11031438-11031481)
chr1 (17-59)||(11032218-11032260)
chr1 (18-60)||(30780984-30781026)
chr1 (15-60)||(2687724-2687769)
chr1 (18-62)||(4640532-4640576)
chr1 (18-62)||(4641762-4641806)
chr1 (18-70)||(38931310-38931362)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 67 - 477
Target Start/End: Complemental strand, 8546658 - 8546247
Alignment:
Q  67 taaaagggacacatggaaacatgtatggtctaaggactttgtttttaaatat-agggagtcattgtaataatttagtaggccttagctaggcccaattac 165  Q
    ||||||||||||   ||||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8546658 taaaagggacaccaagaaacttgtatagtctaaggactttgttttcaaatattagggagtcattgtaataatttagtaggccttagctaggcccaattac 8546559  T
Q  166 tttatatccattagtggcttagagctcattatgtcttcatcagccaaccctggtatataaagggggccgactatctttatcattttatgaaatcaaaagt 265  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546558 tttatatccattagtggcttagagcccattatgtcttcatcagccaaccctagtatataaagggggccgactatctttatcattttatgaaatcaaaagt 8546459  T
Q  266 tcaatttttattatcctttatgtttctgcagttttaatccctgtttgtcttctagcttaaccctagttgggagagaaacccaaaacgtagcatagttggt 365  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||| |||  |||||    
T  8546458 tcaatttttattatcctttatctttctgcagttttaatccccgtttgtcttctagcttaatcctagttggaagagaaacccagaacgtaacatcattggt 8546359  T
Q  366 gctttcataccttttctcaatgccccctaaaccaacggtgccgcctaatccaaccacccgtgaccttgaagaagtcattgccggccataaaaaacttcat 465  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  8546358 gctttcataccttttctcattgccccctaaaccaacggtgccgcctaatccaaccacctgtgaccttgaagaagccattgccagccataaaaaacttcat 8546259  T
Q  466 cttctttcttct 477  Q
    ||||||||||||    
T  8546258 cttctttcttct 8546247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 37562343 - 37562301
Alignment:
Q  18 actttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    ||||||| |||||||||| |||||||||||||||||| |||||    
T  37562343 actttcctatggtgggaaacaattctcctttcccatgctaaac 37562301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 38572272 - 38572220
Alignment:
Q  16 taactttcccatggtgggaagcaattctcctttcccatgttaaactctaccta 68  Q
    ||||||||||||||||||||   |||  ||||||||||||||||||| |||||    
T  38572272 taactttcccatggtgggaaaagattgacctttcccatgttaaactccaccta 38572220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 104 - 452
Target Start/End: Original strand, 18999 - 19344
Alignment:
Q  104 tttgtttttaaatat-agggagtcattgtaataatttagtaggccttagctaggcccaattactttatatccattagtggcttagagctcattatgtctt 202  Q
    |||||||| |||||| | |||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||||||||||| |||| | ||  ||| |    
T  18999 tttgttttcaaatattaaggagtcattgtaataagttaggaggctttagctaggcccaattgccttatatccattagtggctttgagcccttt--gtcct 19096  T
Q  203 catcagccaaccctggtatataaagggggccgactatctttatcattttatgaaatcaaaagttcaatttttattatcct-ttatgtttctgcagtttta 301  Q
    || ||||||||||| ||||||||||||||| || |||||||||    ||||||||||| || ||||||||| |||||| | || | | | ||||||||||    
T  19097 caccagccaaccctagtatataaagggggctgattatctttatttggttatgaaatcataaattcaatttt-attatcttcttttctatatgcagtttta 19195  T
Q  302 at-ccctgtttgtcttctagcttaaccctagttgggagagaaacccaaaacgtagcatagttggtgctttcataccttttctcaatgccccctaaaccaa 400  Q
     | ||||||| ||||||||||| ||||||||| |||||||||||||| ||||| ||||  ||||||||||||| | ||| ||||||||| |||||||||     
T  19196 tttccctgtt-gtcttctagctcaaccctagt-gggagagaaacccagaacgt-gcatcattggtgctttcattcttttcctcaatgcctcctaaaccag 19292  T
Q  401 cggtgccgcctaatccaaccacccgtgaccttgaagaagtcattgccggcca 452  Q
    | | ||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  19293 ccgcgccgcctaatccaaccacccgcgaccttgaagaagccatcgccggcca 19344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 83 - 353
Target Start/End: Original strand, 32311 - 32579
Alignment:
Q  83 aaacatgtatggtctaaggactttgtttttaaatat-agggagtcattgtaataatttagtaggccttagctaggcccaattactttatatccattagtg 181  Q
    |||| |||||||||||||||||||||||| |||||| | |||||||||||||||| |||| |||| |||||||||||||||| | |||||||||||||||    
T  32311 aaacctgtatggtctaaggactttgttttcaaatattaaggagtcattgtaataagttaggaggctttagctaggcccaattgccttatatccattagtg 32410  T
Q  182 gcttagagctcattatgtcttcatcagccaaccctggtatataaagggggccgactatctttatcattttatgaaatcaaaagttcaatttttattatcc 281  Q
    |||| |||| |  | |||| ||| ||||||||||| ||||||||||||||| || |||||||||    ||||||||||| || ||||| ||||||||||     
T  32411 gctttgagccc--tttgtcctcaccagccaaccctagtatataaagggggctgattatctttatttggttatgaaatcataaattcaa-ttttattatct 32507  T
Q  282 t-ttatgtttctgcagtttta-atccctgtttgtcttctagcttaaccctagttgggagagaaacccaaaacgt 353  Q
    | || | | | ||||||||||  |||||| ||||||||||||| |||||||| ||||||||||||||| |||||    
T  32508 tcttttctatatgcagttttatttccctg-ttgtcttctagctcaaccctag-tgggagagaaacccagaacgt 32579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 14198 - 14306
Alignment:
Q  83 aaacatgtatggtctaaggactttgtttttaaatat-agggagtcattgtaataatttagtaggccttagctaggcccaattactttatatccattagtg 181  Q
    |||| |||||||||||| ||||||||||| |||||| | |||||||||||||||| |||| |||| |||||||||||||||| | |||||||||||||||    
T  14198 aaacctgtatggtctaacgactttgttttcaaatattaaggagtcattgtaataagttaggaggctttagctaggcccaattgccttatatccattagtg 14297  T
Q  182 gcttagagc 190  Q
    |||| ||||    
T  14298 gctttgagc 14306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 34034219 - 34034168
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaactctacc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34034219 ataactttcccatggtgggaagcaattctcctttcccatgttaaactctacc 34034168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 34035041 - 34035093
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaactctacct 67  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||| ||||    
T  34035041 ataactttcccatgatgggaaacaattctcctttcccatgttaaactccacct 34035093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 38780061 - 38780113
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaactctacct 67  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  38780061 ataactttcccatgatggaaagcaattctcctttcccatgttaaactccacct 38780113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 34617704 - 34617659
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||||    
T  34617704 ataactttcccatggtgggaaacaattatcctttcccatgctaaac 34617659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 6084920 - 6084877
Alignment:
Q  17 aactttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    |||||||||||| |||||| |||||| |||||||||||||||||    
T  6084920 aactttcccatgatgggaaacaattcccctttcccatgttaaac 6084877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 14565214 - 14565262
Alignment:
Q  20 tttcccatggtgggaagcaattctcctttcccatgttaaactctaccta 68  Q
    ||||||||||||||||   |||| ||||||||||||||||||| |||||    
T  14565214 tttcccatggtgggaaaggattcacctttcccatgttaaactccaccta 14565262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 22499971 - 22500022
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaactctacc 66  Q
    |||||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  22499971 ataactttcctatggtggaaaacaattctcctttcccatgttaaactctacc 22500022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 22499149 - 22499097
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaactctacct 67  Q
    |||||||||||||| ||| || |||||||||||||||||||||||||| ||||    
T  22499149 ataactttcccatgatggaaaacaattctcctttcccatgttaaactccacct 22499097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 30808671 - 30808628
Alignment:
Q  16 taactttcccatggtgggaagcaattctcctttcccatgttaaa 59  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||    
T  30808671 taactttcccatggtgggaaacaactctcctttcccattttaaa 30808628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 33370873 - 33370917
Alignment:
Q  16 taactttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    |||||||||||||||||||| ||| | |||||||||||| |||||    
T  33370873 taactttcccatggtgggaaacaagtatcctttcccatgctaaac 33370917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 34371511 - 34371475
Alignment:
Q  17 aactttcccatggtgggaagcaattctcctttcccat 53  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  34371511 aactttcccatggtgggaaacaattcccctttcccat 34371475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 38009335 - 38009291
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaa 59  Q
    |||||||| |||||||||||| ||||| |||||||||||| ||||    
T  38009335 ataacttttccatggtgggaaacaattatcctttcccatgctaaa 38009291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 40257516 - 40257471
Alignment:
Q  17 aactttcccatggtgggaagcaattctcctttcccatgttaaactc 62  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||    
T  40257516 aactttaccatggtcggaagcaattctcctttcccatgttaaactc 40257471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 29060738 - 29060781
Alignment:
Q  17 aactttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||    
T  29060738 aactttcccatggtgggaaacaattcccctttcccatgctaaac 29060781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 42607130 - 42607087
Alignment:
Q  17 aactttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||    
T  42607130 aactttcccatggtgggaaacaattcccctttcccatgctaaac 42607087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 24996683 - 24996727
Alignment:
Q  18 actttcccatggtgggaagcaattctcctttcccatgttaaactc 62  Q
    |||||||||||||||||| ||| || ||||||||||| |||||||    
T  24996683 actttcccatggtgggaaacaactcccctttcccatgctaaactc 24996727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 32941 - 32888
Alignment:
Q  16 taactttcccatggtgggaagcaattctcctttcccatgttaaactctacctaa 69  Q
    ||||||||| ||||||||||   |||||||||||||||||||||||| ||||||    
T  32941 taactttcctatggtgggaaaggattctcctttcccatgttaaactccacctaa 32888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 35262503 - 35262456
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaactc 62  Q
    |||||||||||||||| |||| ||||| |||||||||||| |||||||    
T  35262503 ataactttcccatggtaggaaacaattatcctttcccatgctaaactc 35262456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 4789571 - 4789526
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    ||||||||||||||||||||| ||| || ||||||||||| |||||    
T  4789571 ataactttcccatggtgggaaacaactcccctttcccatgctaaac 4789526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 49161807 - 49161850
Alignment:
Q  17 aactttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||    
T  49161807 aactttcccatggtgggaaacaattcccctttcccatgctaaac 49161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 33454915 - 33454863
Alignment:
Q  17 aactttcccatggtgggaagcaattctcctttcccatgttaaactctacctaa 69  Q
    ||||||| ||||||||||| ||||| |||||||||||| ||||| | ||||||    
T  33454915 aactttctcatggtgggaaacaattttcctttcccatgctaaaccccacctaa 33454863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 11031481 - 11031438
Alignment:
Q  16 taactttcccatggtgggaagcaattctcctttcccatgttaaa 59  Q
    |||||||||||||||||||| | |||| ||||||||||||||||    
T  11031481 taactttcccatggtgggaaactattcccctttcccatgttaaa 11031438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 11032218 - 11032260
Alignment:
Q  17 aactttcccatggtgggaagcaattctcctttcccatgttaaa 59  Q
    ||||||||||||||||||| | |||| ||||||||||||||||    
T  11032218 aactttcccatggtgggaaactattcccctttcccatgttaaa 11032260  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 30780984 - 30781026
Alignment:
Q  18 actttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||    
T  30780984 actttcccatgatgggaaacaactctcctttcccatgttaaac 30781026  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 2687724 - 2687769
Alignment:
Q  15 ataactttcccatggtgggaagcaattctcctttcccatgttaaac 60  Q
    |||| |||||||||||||||| ||||| |||||||||||| |||||    
T  2687724 ataattttcccatggtgggaaacaattatcctttcccatgctaaac 2687769  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 4640576 - 4640532
Alignment:
Q  18 actttcccatggtgggaagcaattctcctttcccatgttaaactc 62  Q
    |||||||||||||||||| |||||| ||||| ||||| |||||||    
T  4640576 actttcccatggtgggaaacaattcccctttaccatgctaaactc 4640532  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 4641762 - 4641806
Alignment:
Q  18 actttcccatggtgggaagcaattctcctttcccatgttaaactc 62  Q
    |||||||| ||||||||| |||||| ||||||||||| |||||||    
T  4641762 actttcccttggtgggaaacaattcccctttcccatgctaaactc 4641806  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 38931362 - 38931310
Alignment:
Q  18 actttcccatggtgggaagcaattctcctttcccatgttaaactctacctaaa 70  Q
    |||||||||||||||||| |||||| |||||| |||| ||||| | |||||||    
T  38931362 actttcccatggtgggaaacaattcccctttctcatgctaaaccccacctaaa 38931310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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