View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11501_low_6 (Length: 469)

Name: NF11501_low_6
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11501_low_6
NF11501_low_6
[»] chr7 (4 HSPs)
chr7 (20-176)||(6323002-6323159)
chr7 (20-234)||(6324084-6324295)
chr7 (370-465)||(6323184-6323279)
chr7 (186-272)||(28126367-28126453)
[»] chr4 (2 HSPs)
chr4 (186-272)||(52518952-52519038)
chr4 (111-213)||(3274451-3274554)
[»] scaffold0286 (1 HSPs)
scaffold0286 (118-235)||(15198-15316)
[»] chr6 (4 HSPs)
chr6 (118-235)||(2161790-2161908)
chr6 (186-272)||(5377070-5377156)
chr6 (38-122)||(30371938-30372022)
chr6 (29-93)||(30376297-30376361)
[»] chr2 (2 HSPs)
chr2 (114-175)||(20515991-20516053)
chr2 (232-280)||(31155477-31155525)
[»] chr1 (1 HSPs)
chr1 (186-272)||(17449502-17449588)
[»] chr3 (1 HSPs)
chr3 (207-268)||(6789833-6789894)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 6323002 - 6323159
Alignment:
Q  20 aactactatagttagatggttatggttggttaaccattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatctttttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6323002 aactactatagttagatggttatggttggttaaccattctagttagtatcatagagaactataaataaatcacttcattgcatctcatcttatctttttt 6323101  T
Q  120 caatctatattcattcaatatgaatttctatgagtattctt-ccatgaatacacataa 176  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6323102 caatctatattcattcaatatgaatttctatgagtattcttcccatgaatacacataa 6323159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 6324084 - 6324295
Alignment:
Q  20 aactactatagttagatggttatggttggttaaccattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatctttttt 119  Q
    |||||||||||||| ||| |||||||| ||||| | ||||||||||||| |||||| |||||||||| |||||||||||| ||| ||| |||||||||||    
T  6324084 aactactatagttaaatgattatggtttgttaatcgttctagttagtattatagaggactataaatatgtcacttcattgtatcccattttatctttttt 6324183  T
Q  120 caatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttgac 218  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||| |||||||||| || ||| | |||||    || ||| |||||||||||||||||    
T  6324184 caatctatattcattcaatatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgc----atatatgatctttctccctttgac 6324279  T
Q  219 tccgtgattctcaaca 234  Q
    ||| | ||||||||||    
T  6324280 tccattattctcaaca 6324295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 370 - 465
Target Start/End: Original strand, 6323184 - 6323279
Alignment:
Q  370 ttcacaaaattcaattctttttgtggagtgaattcagttcgatcatcactgttttcctcgcttgtgtttgtggcggcgatttgtctctgtgctcct 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6323184 ttcacaaaattcaattctttttgtggagtgaattcagttcgatcatcactgttttcctcgcttgtgtttgtggcggcgatttgtctcagtgttcct 6323279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 28126453 - 28126367
Alignment:
Q  186 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 272  Q
    |||||||| |||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  28126453 cttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagat 28126367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 52518952 - 52519038
Alignment:
Q  186 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 272  Q
    |||||||| |||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  52518952 cttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagat 52519038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 3274554 - 3274451
Alignment:
Q  111 atcttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttct 209  Q
    ||||||| |||||||||||| ||||||||| ||| | || ||||||||||| |||||||||||||| || ||| |  ||||||| || ||| || |||||    
T  3274554 atcttttatcaatctatatttattcaatataaatctatacgagtattcttcacatgaatacacatatgctctctattttgcttacatatatgatgtttct 3274455  T
Q  210 ccct 213  Q
    ||||    
T  3274454 ccct 3274451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 15198 - 15316
Alignment:
Q  118 ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttg 216  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| |||||  ||||| ||    
T  15198 ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg 15297  T
Q  217 actccgtgattctcaacat 235  Q
    | ||| ||||| |||||||    
T  15298 attccatgattttcaacat 15316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 2161908 - 2161790
Alignment:
Q  118 ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttg 216  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| |||||  ||||| ||    
T  2161908 ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg 2161809  T
Q  217 actccgtgattctcaacat 235  Q
    | ||| ||||| |||||||    
T  2161808 attccatgattttcaacat 2161790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 5377070 - 5377156
Alignment:
Q  186 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 272  Q
    |||||||| |||||| |  ||||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  5377070 cttgcttacatctatgacttttctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatgaagat 5377156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 30371938 - 30372022
Alignment:
Q  38 gttatggttggttaaccattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaa 122  Q
    ||||||||| |||||||| |||||| ||  | ||||||||||||||||||| |||| || || ||||||  ||||||||| ||||    
T  30371938 gttatggttagttaaccactctagtcagggttatagagaactataaataagccactccactgtatctcaatttatcttttatcaa 30372022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 30376297 - 30376361
Alignment:
Q  29 agttagatggttatggttggttaaccattctagttagtatcatagagaactataaataagtcact 93  Q
    |||||| |||| |||||| |||||||| |||||||||  | ||||||||||||||| ||| ||||    
T  30376297 agttaggtggtgatggttagttaaccactctagttagggttatagagaactataaagaagccact 30376361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 20516053 - 20515991
Alignment:
Q  114 ttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacata 175  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  20516053 tttttgcaatctatattcattcaatatgaatttctatgagtattcttctcatgattacacata 20515991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 31155525 - 31155477
Alignment:
Q  232 acatggtatcagagtgatactcgagggaggaagatgaagattgtgcttc 280  Q
    |||||||||||||| ||||| ||||||| | ||||||||| ||||||||    
T  31155525 acatggtatcagagcgatacccgagggatgtagatgaagactgtgcttc 31155477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 17449502 - 17449588
Alignment:
Q  186 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 272  Q
    |||||||| |||||| | |||||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||| ||||||||||||||    
T  17449502 cttgcttacatctatgacctttctccctatgattccatgattcttaacatggtatcagagcgataccctaggaaggaagatgaagat 17449588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 6789833 - 6789894
Alignment:
Q  207 tctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatga 268  Q
    ||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||||||||||||||    
T  6789833 tctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatga 6789894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University