View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_low_7 (Length: 432)
Name: NF11501_low_7
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 29708044 - 29708461
Alignment:
| Q |
1 |
tcaccaacatcatctataataaacacatcaataccaactcggttaagcaaggaggagaaggaggcgtctctaacaagattaacgtcaacaa----tccat |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29708044 |
tcaccaacatcatctataataaacacatcaataccaactcggttaagcgaggaggagaaggaggcgtctctaacaagattaacgtcaacaacctctccat |
29708143 |
T |
|
| Q |
97 |
atctggatatatcaccaaaaacaaaacacttgtcatcttcaatacacaaattagtagtaaaattttaattgatatgcaccgacaccataagaatactatc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29708144 |
atctggatatatcaccaaaaacaaaacacttgtcatcttcaatacacaaattaatagtaaaattttaattgatatgcaccgacaccataagaatactatc |
29708243 |
T |
|
| Q |
197 |
atcaatcataacctatccatcttaaaagtcatacaacagacgattgtgattgattgaaagtgtaaataaaatttacatcaacagtgcatcatctcatgat |
296 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29708244 |
atcaatcataacctatctatcttaaaagtcatacaacagacgattgtgattgattgaaagtgtaaataaaatttacatcaacggtgcatcatctcatgat |
29708343 |
T |
|
| Q |
297 |
caaatgcatgaaaataaaacatactgagcaaaaacagcgatgacatcaccctcagtgaaatcaaagggaataccaccaacgaaaacataagcagaatctt |
396 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29708344 |
caaatgcatgaaaataagacatactgagcaaaaacagcgatgatatcaccctcagtgaaatcaaagggaataccaccaacgaaaacataagcagaatctt |
29708443 |
T |
|
| Q |
397 |
tgtatttagtgtgccacg |
414 |
Q |
| |
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| T |
29708444 |
tgtatttagtgtgccacg |
29708461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 414
Target Start/End: Original strand, 29706748 - 29706950
Alignment:
| Q |
217 |
cttaaaagtcatacaacagacgattgtgattgattgaaagtgtaaataaaattta-catcaacagtgcatca-------tctcatgatcaaatgcatgaa |
308 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||| |||||||| || |||| |||| ||||||||||| |||||| | |||||||| | |
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| T |
29706748 |
cttaaaagtcatataccagacgattgtgattgattgacagtgtaaaagaagtttaacatcgacagtgcatcaaagttaatctcatta---aatgcatgga |
29706844 |
T |
|
| Q |
309 |
aataaaacatactgagcaaaaacagcgatgacatcaccctcagtgaaatcaaagggaataccaccaacgaaaacataagcagaatctttgtatttagtgt |
408 |
Q |
| |
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|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
29706845 |
aagaatacatactgagcaaaaacagcgataacatcaccctcagtgaaatcaaagggaataccaccgacgaaaacataagcagaatctttgtattttgtgt |
29706944 |
T |
|
| Q |
409 |
gccacg |
414 |
Q |
| |
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|||||| |
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|
| T |
29706945 |
gccacg |
29706950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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