View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11501_low_8 (Length: 430)
Name: NF11501_low_8
Description: NF11501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11501_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 40466248 - 40465838
Alignment:
| Q |
1 |
agagagatggaaatgaaggtatcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaac |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466248 |
agagagatagaaatgaaggtatcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaac |
40466149 |
T |
|
| Q |
101 |
ttggaaaagaattggtaattattactacttttgaannnnnnnnncattttccttattttatcatcatgaataatacaatannnnnnncataacttcttca |
200 |
Q |
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| T |
40466148 |
ttggaaaagaattggtaattattactacttttgaa-ttttttttcattttccttattttatcatcatgaataatacaata-ttttttcataacttc---- |
40466055 |
T |
|
| Q |
201 |
tttgtctttgtactttagtgcttaatttatttatatactctctataacaaaatataagtaaaagcgggtcaaagaaatttgacgtatttggttcacctat |
300 |
Q |
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| T |
40466054 |
---gtctttgtactttagtgcttaatttatttatatactctctgtaacaaaatataagtaaaagcgagtcaaagaaatttgacgtatttgtttcacctat |
40465958 |
T |
|
| Q |
301 |
atac-------ataatatggtgtttagttctaaacttcgttgtattttgatatataaaaaggtgtcaagaaatattgacctagtttatggaggaggcagc |
393 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465957 |
atacctatgatataatatggtgtttagttctaaacttcgttgtattttgatatataaaaaggtgtcaagaaatattgacctagtttatggaggaggcagc |
40465858 |
T |
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| Q |
394 |
attggtttgatggggttgat |
413 |
Q |
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| T |
40465857 |
attggtttgatggggttgat |
40465838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 21624013 - 21624111
Alignment:
| Q |
21 |
atcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggtaat |
119 |
Q |
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| T |
21624013 |
atcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaat |
21624111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 411
Target Start/End: Original strand, 21625299 - 21625362
Alignment:
| Q |
348 |
taaaaaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttg |
411 |
Q |
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| T |
21625299 |
taaaaaggtgtcaagaaatattgatttggtttatggaggaggcagcattggtttgatggggttg |
21625362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 28271509 - 28271462
Alignment:
| Q |
352 |
aaggtgtcaagaaatattgacctagtttatggaggaggcagcattggt |
399 |
Q |
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| T |
28271509 |
aaggtgtcaagaaatattgatctagtttatggaggaggaagcattggt |
28271462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 28272022 - 28271927
Alignment:
| Q |
22 |
tcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggta |
117 |
Q |
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|||||||| ||||| ||||||| |||||||| ||||| ||||| || |||| ||| ||| | |||||||| |||||||||||||| ||||||||| |
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| T |
28272022 |
tcaaagttcaagagggtttgtgtcttttgtggaagtagtcctggcaagaaaagtagttatcaagatgctgccattgaacttggaaatgaattggta |
28271927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 38462751 - 38462800
Alignment:
| Q |
240 |
ctctataacaaaatataagtaaaagcgggtcaaagaaatttgacgtattt |
289 |
Q |
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|||| |||||||||||||| ||||||| |||||||||| |||| |||||| |
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| T |
38462751 |
ctctgtaacaaaatataagcaaaagcgagtcaaagaaagttgaggtattt |
38462800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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