View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11502_high_2 (Length: 446)
Name: NF11502_high_2
Description: NF11502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11502_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 4150245 - 4150046
Alignment:
| Q |
39 |
aaattcaaggtgtccgagtctgtcacgtttcagcatctcacaccaacatga-gctaataagtgtggttacatacaatcacttcaattttccttaattgtt |
137 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| |||||||||| ||||| | ||||| ||||| || ||||||||||| ||||||||| ||||||||| |
|
|
| T |
4150245 |
aaatttaaggtgtcagagtccgtcacgtttcaatgtctcacaccaccatgatgttaataggtgtgatttcatacaatcacatcaattttctttaattgtt |
4150146 |
T |
|
| Q |
138 |
atcggtgtctgcatatagatgttggtttcgtgtccggtttgtatgtttgtgtttatgtttcataacatttgatataaggtaaaatcaattctatcactct |
237 |
Q |
| |
|
|| |||||| | ||||||||| ||| ||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
4150145 |
ttcagtgtctacgtatagatgtgggtgccgtgttcggtttgtatgtttgtgtcaatgtttcatatcatttgatagaaggtaaaatcaattctaacactct |
4150046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 2492770 - 2492871
Alignment:
| Q |
254 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataaa |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2492770 |
acataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaa |
2492869 |
T |
|
| Q |
354 |
gt |
355 |
Q |
| |
|
|| |
|
|
| T |
2492870 |
gt |
2492871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 2489489 - 2489587
Alignment:
| Q |
254 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataa |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2489489 |
acataatattgaaccataaaccctgctggagttttctcctacagtggtttggtaaaatccttggtgatcaaccacatttgaagcaagagaatccaataa |
2489587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 2495900 - 2495998
Alignment:
| Q |
254 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataa |
352 |
Q |
| |
|
||||||||||| |||||||| |||| | | |||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
2495900 |
acataatattgtaccataaagcctgttaggcttttttcctacaatggtttggtaaaatccatggctatcaacgacgtttgaagcaagagaatccaataa |
2495998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University