View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11502_high_3 (Length: 439)
Name: NF11502_high_3
Description: NF11502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11502_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 79 - 316
Target Start/End: Original strand, 41250471 - 41250713
Alignment:
| Q |
79 |
atttaaatttaaaaggagggaaatcaggtttattttatttcttagtcttggcttgatataataaagagaaataataaaaacaagaagaagnnnnnnnn-- |
176 |
Q |
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| T |
41250471 |
atttaaatttaaaaggagggaaatcaggtttattttatttcttagtcttgccttgatataataaagagaaataataaaaacaagaagaagaagaagaaaa |
41250570 |
T |
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| Q |
177 |
------gatcatcgatatttgtcttaatacatgtaaaaagtcaaaacttttttaattttaattattactcggttggcaattttaccacgcttatctggta |
270 |
Q |
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| T |
41250571 |
aaaaaagatcatcgat---tgtcttaatacatgtaaaaagtcaaaacttttttaattttaattattactcggttggcaattttaccacgcttatctggta |
41250667 |
T |
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| Q |
271 |
attattcacatgatcgacaatagattctatagcatcccccatgatc |
316 |
Q |
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| T |
41250668 |
attattcacatgatcgacaatagattctatagcatcccccatgatc |
41250713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 41250757 - 41250842
Alignment:
| Q |
328 |
tatatatataacaccattttcattatcttgaagattcattagtattcgtccttggttttaagtcagttaatcaccacctgataatg |
413 |
Q |
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| T |
41250757 |
tatatataaaacaccattttcattttcttgaagattcattagtattcgtccttggttttaagtcagttaatcaccacccgataatg |
41250842 |
T |
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