View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11502_high_6 (Length: 242)
Name: NF11502_high_6
Description: NF11502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11502_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 51893588 - 51893365
Alignment:
| Q |
18 |
acaagtgtatcggtgcccgccccttataaaattcatacaaagaaaaggtagaatccaaagatatttnnnnnnnnnncaatcatcaagggagggaaaaaac |
117 |
Q |
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| T |
51893588 |
acaagtgtatcggtgcccgcccgttataaaattcatacaaagaaatggtagaatccaaagatatttaaaaaaaaa-caatcatcaagggagggaaaaaac |
51893490 |
T |
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| Q |
118 |
ccaaactcccaaatcacaatcccacgaacttatatgctacacatcaagtaaaccctaaaagccaacggtaccaactacaactgcattgagttgagacatt |
217 |
Q |
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| T |
51893489 |
ccaaactcccaaatcacaatcccacaaacttatatgctacacatcaagtaaaccctaaaagccaacggtaccaactacaactgcattgagttgagacatt |
51893390 |
T |
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| Q |
218 |
gataactcgagattaccaaaagcca |
242 |
Q |
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| T |
51893389 |
gataactcgagattaccaaaagcca |
51893365 |
T |
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