View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11503_low_1 (Length: 535)
Name: NF11503_low_1
Description: NF11503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11503_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 66 - 520
Target Start/End: Complemental strand, 10576624 - 10576170
Alignment:
| Q |
66 |
tttatgaccaatatatggatatccctgatagccacaaaaatagttttaaatgtttaagacaatgcaaatgtacatcaaagggtccccagaggctaactaa |
165 |
Q |
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| T |
10576624 |
tttatgaccaatatatggatatccctgatagccacgaaaatagttttaaatgtttaagacaatgcaaatgtacatcaaagggtccc-agaggctaactaa |
10576526 |
T |
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| Q |
166 |
ctctcaattgagaggctttgtgacttgaattgggtgcatatatgaggatgcatgaattgtgacaagaactcttttctcctctcctctgttattccttttc |
265 |
Q |
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| T |
10576525 |
ctctcaattgagaggctttgtgacttgaattgggtgcatatatgaggatgcatgaattgtgacaagaactcttttctcctctcctctgttattccttttc |
10576426 |
T |
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| Q |
266 |
cttcaaaattttgaacattctgcaccttttgcgcattttgtacactaagatcttctgttattcctttggtgctttcattttgtcataagaggttgaacat |
365 |
Q |
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| T |
10576425 |
cttcaaaattctgaacattctgcaccttttgcgcattttgtacactaagatcttctgttattcctttggtgctttcattttgtcagaagaggttgaacat |
10576326 |
T |
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| Q |
366 |
tggtgg-nnnnnnnctcgccggaatatggaagcagaggctgtagaagtggaagtctttgaactgaagcaagggaatacgttcgtagctgacaatgcagtc |
464 |
Q |
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| T |
10576325 |
tggtggaaaaaaaactcgccggaatatggaagcagaggctgtagaagtggaagtctttgaactgaagcaagggaatacgttcgtagctgacaatgcagtc |
10576226 |
T |
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| Q |
465 |
aaatttgagaaatagtctatgttctgtcccactataatggtgcatatgcaattcat |
520 |
Q |
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| T |
10576225 |
aaatttgagaaatagtctatgttctgtcccactataatggtgtatatgcaattcat |
10576170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10576925 - 10576851
Alignment:
| Q |
1 |
caaccatggcaagaacgagatgaccagatgtccaagaatctaaaatcaacttacagaacaatacttttatgacca |
75 |
Q |
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| T |
10576925 |
caaccatagcaagaacgagatgaccagatgtccaagaatctaaaatcaacttacagaacaatacttttatgacca |
10576851 |
T |
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