View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11503_low_2 (Length: 439)
Name: NF11503_low_2
Description: NF11503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11503_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 41129939 - 41130352
Alignment:
| Q |
11 |
cacagactacaatacatccaatcaagaacatgtagttgatctctggaatataaacttgaccttcatgcttagctgaagtatgaacaaccttgactctagg |
110 |
Q |
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| T |
41129939 |
cacaaactacaatacatccaatcaagaacatgtagttgatctctggaatataaacttgaccttcatggttagctgaagtatgaacaaccttgactctagg |
41130038 |
T |
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| Q |
111 |
gaaacaacctagactaagggcttgtgatataatggaaaatgctcctgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgtt |
210 |
Q |
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| T |
41130039 |
gaaacaacctaaactaagggcttgtgatataatggaaaatgctcctgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgtt |
41130138 |
T |
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| Q |
211 |
ggccaatacaagggatctgcatgttattcacatttattaataataatgtgcgtatgatttctcttaaatattaatcaactaattaataataattacctgg |
310 |
Q |
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| T |
41130139 |
ggccaatacaagggatctgcatgttattcacatttaataataataatgtgggtatgatttctcttaaaaattaatcaactaattaataataattacctgg |
41130238 |
T |
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| Q |
311 |
tatactttcatagaaagtattccccactttgtcaggaaattgtcttagaaatgctgcttgcccaatatatgctgtcaatattgcaggaaatgtaacaaaa |
410 |
Q |
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| T |
41130239 |
tatactttcatagaaagtattccccactttgtcaggaaattgtcttagatatgctgcttgcccaatatatgccgtcaatattgcaggaaatgtaacaaaa |
41130338 |
T |
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| Q |
411 |
gaaaagctaatctg |
424 |
Q |
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| T |
41130339 |
gaaaagctaatctg |
41130352 |
T |
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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 7801091 - 7800916
Alignment:
| Q |
46 |
ttgatctctggaatataaacttgaccttcatgcttagctgaagtatgaacaaccttgactctagggaaacaacctagactaagggcttgtgatataatgg |
145 |
Q |
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||||| || |||||||||||||| |||| ||| || | ||||| || |||||||| || || ||||||||||| | ||| | ||||| |||||||||| |
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| T |
7801091 |
ttgatttcaggaatataaacttggccttgatgtttggtagaagtgtgcacaaccttaacccttgggaaacaacccatacttaaagcttgagatataatgg |
7800992 |
T |
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| Q |
146 |
aaaatgctcctgaaatcattgcctgactagctataatggcagcaccaatagccacaacaaatgttggccaatacaa |
221 |
Q |
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| T |
7800991 |
aaaatgctgcggaaactattgcttggctagctatgatggaagcaacaaccgcaacaacaaatgttggccaatacaa |
7800916 |
T |
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