View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11503_low_4 (Length: 382)
Name: NF11503_low_4
Description: NF11503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11503_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 72 - 374
Target Start/End: Original strand, 25356914 - 25357216
Alignment:
| Q |
72 |
ctacaatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaag |
171 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25356914 |
ctacaacatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaag |
25357013 |
T |
|
| Q |
172 |
ggttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcatt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25357014 |
ggttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcatt |
25357113 |
T |
|
| Q |
272 |
ctggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattctttggtaatcttataacatgcatcgcgtctttttgtttttctctct |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25357114 |
ctggttgagaggctctccatcaacaagcacttctggttgttgttgatctaattctttggtaatcttataacatgcatcgcgtctttttgtttttctcttt |
25357213 |
T |
|
| Q |
372 |
gct |
374 |
Q |
| |
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||| |
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| T |
25357214 |
gct |
25357216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 72 - 374
Target Start/End: Original strand, 25352245 - 25352554
Alignment:
| Q |
72 |
ctacaatatccaagagaggtgttacataaagtccattattaagtaactaa-taagaattgaaataaaatgaagatatgaagactcacataagatggtaaa |
170 |
Q |
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||||||||||||||||| |||||||| ||||| |||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25352245 |
ctacaatatccaagagatgtgttacagaaagtacattatatattaagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtaca |
25352344 |
T |
|
| Q |
171 |
gg---gttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacacttttt |
267 |
Q |
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|| |||||||||||||| |||||||| ||| || ||||||| ||||||||||| |||||||| ||| |||||| |||| ||||| |||| || |
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| T |
25352345 |
ggcgggttagggtcagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcagatacttctt |
25352444 |
T |
|
| Q |
268 |
cattctggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattctttggtaatcttataacatgcatcgcg---tctttttgtttt |
364 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |
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| T |
25352445 |
gattatggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctttttgtttt |
25352544 |
T |
|
| Q |
365 |
tctctctgct |
374 |
Q |
| |
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||||| |||| |
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|
| T |
25352545 |
tctctttgct |
25352554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 25349711 - 25349846
Alignment:
| Q |
74 |
acaatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaaggg |
173 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25349711 |
acaatatccaagaaaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaaggg |
25349810 |
T |
|
| Q |
174 |
ttagggtcagcagttgttggtacaaggttcactacagaaa |
213 |
Q |
| |
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| |||||||| ||||||||||||| || |||||||||| |
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| T |
25349811 |
t--gggtcagc--ttgttggtacaagatttactacagaaa |
25349846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 25361580 - 25361649
Alignment:
| Q |
72 |
ctacaatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga |
144 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||| |||||| || |||||||||||||||||||| |
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| T |
25361580 |
ctacaatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga |
25361649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 25356861 - 25356891
Alignment:
| Q |
19 |
ctcaccacctttaaatccaactttcttgtaa |
49 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25356861 |
ctcaccacctttaaatccaactttcttgtaa |
25356891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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