View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11503_low_5 (Length: 334)
Name: NF11503_low_5
Description: NF11503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11503_low_5 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 25 - 321
Target Start/End: Original strand, 35676245 - 35676534
Alignment:
| Q |
25 |
aactgtgcaagttgcaatgttatcggaaaaaacagtacatgcaacgtgacttgttctcattgtatgctttgattttcaccttatcattattcattattag |
124 |
Q |
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| T |
35676245 |
aactgtgcaagttgcaatgttatcggaaaaaacagtacatgcaacgtgacttgttctcatcgtatgctttgattttcaccttatcattattcattattag |
35676344 |
T |
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| Q |
125 |
tacaatcatttagtcaccataattaaatataatatagaggaagatatgagaagaagaaccataaacatcgaccaagtgatatatcacgaagagattggtt |
224 |
Q |
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| T |
35676345 |
tacaatcatttagtcaccataa----atataatatagaggaagatatgagaa---gaaccataaacatcgaccaagtgatatatcacgaagagattggtt |
35676437 |
T |
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| Q |
225 |
tttatcatctgcactcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
321 |
Q |
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| T |
35676438 |
tttatcatctgcactcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
35676534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 35655383 - 35655467
Alignment:
| Q |
238 |
ctcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgctt |
322 |
Q |
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| T |
35655383 |
ctcaacagaaaccaaaggttaagccatgtccacctttctacacagttctctttcacaggaaatcttctcttcattccctatgctt |
35655467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 35645953 - 35646039
Alignment:
| Q |
236 |
cactcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgctt |
322 |
Q |
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| T |
35645953 |
cactcaacaaaaaccaaagcttaagccatgtccaccattctgccaagttctctttcacatgaaatcttctcttcattccgtatgctt |
35646039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 35672949 - 35673026
Alignment:
| Q |
247 |
aaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttc--tcttcattccctatgctt |
322 |
Q |
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| T |
35672949 |
aaccaaaggttaagccatgtccacctttctacaaaattctctttcgcatgaaagtttctatattcattccctatgctt |
35673026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 4203 - 4274
Alignment:
| Q |
251 |
aaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgctt |
322 |
Q |
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| T |
4203 |
aaagcttaagccatgtccacctttctacaatgttctctttcgcatgaaagcttctattcattccctatgctt |
4274 |
T |
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