View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11504_high_3 (Length: 396)
Name: NF11504_high_3
Description: NF11504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11504_high_3 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 82 - 379
Target Start/End: Original strand, 6324116 - 6324407
Alignment:
| Q |
82 |
atcgttctagttagtatcatagaagactataaatatgtcacttcattgtattccattttatcttttttcaatctatattcattcaatatgaattttaatg |
181 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324116 |
atcgttctagttagtattatagaggactataaatatgtcacttcattgtatcccattttatcttttttcaatctatattcattcaatatgaattttaatg |
6324215 |
T |
|
| Q |
182 |
agtattcttctcataaatacacatatgctctctatcttgcatacatttatgatctttctccctttgactccattattctcaacacaagaggatgagagta |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324216 |
agtattcttctcataaatacacatatgctctctatcttgcata----tatgatctttctccctttgactccattattctcaacacaagaggatgagagta |
6324311 |
T |
|
| Q |
282 |
tatatgcggaggaaaatgcttgattagttgatgagaaaaatgcttggggtaggaaatgaaaatatgtggctggaaaatacaaatcaaggctggaatcc |
379 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324312 |
tatatgcggaggaaaatactt--ttagttgatgagaaaaatgcttggggtaggaaatgaaaatatgtggctggaaaatacaaatcaaggctggaatcc |
6324407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 6323038 - 6323158
Alignment:
| Q |
86 |
ttctagttagtatcatagaagactataaatatgtcacttcattgtattccattttatcttttttcaatctatattcattcaatatgaattttaatgagta |
185 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6323038 |
ttctagttagtatcatagagaactataaataaatcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatgagta |
6323137 |
T |
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| Q |
186 |
ttcttctcataaatacacata |
206 |
Q |
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|||||| ||| |||||||||| |
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| T |
6323138 |
ttcttcccatgaatacacata |
6323158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 10954211 - 10954301
Alignment:
| Q |
148 |
ttcaatctatattcattcaa-tatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgcatacatttatgatctt |
237 |
Q |
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||||||||||||| |||||| ||| ||||| |||| |||| |||||||||||||||||||||||||||| || | ||||| ||| ||||| |
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| T |
10954211 |
ttcaatctatatttattcaaatattaatttctatgaatattattctcataaatacacatatgctctctattttacttacatctataatctt |
10954301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 15198 - 15315
Alignment:
| Q |
148 |
ttcaatctatattcattcaatatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgcatacatttatgatctttctccctttg |
247 |
Q |
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||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| || |
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| T |
15198 |
ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg |
15297 |
T |
|
| Q |
248 |
actccattattctcaaca |
265 |
Q |
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| T |
15298 |
attccatgattttcaaca |
15315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 2161908 - 2161791
Alignment:
| Q |
148 |
ttcaatctatattcattcaatatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgcatacatttatgatctttctccctttg |
247 |
Q |
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||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| || |
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| T |
2161908 |
ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg |
2161809 |
T |
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| Q |
248 |
actccattattctcaaca |
265 |
Q |
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| T |
2161808 |
attccatgattttcaaca |
2161791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 31528908 - 31528989
Alignment:
| Q |
157 |
tattcattcaa-tatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgcatacatttatgatctt |
237 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| || |||||| |||||| ||||||||| ||||| ||||||||| |
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|
| T |
31528908 |
tattcattcaactatgaattcctatgagtattcttcttatgaatacaactatgcttgctatcttgcttacatctatgatctt |
31528989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 20516053 - 20515970
Alignment:
| Q |
144 |
ttttttcaatctatattcattcaatatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgcatacat |
227 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||| ||||| |
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| T |
20516053 |
tttttgcaatctatattcattcaatatgaatttctatgagtattcttctcatgattacacatatgttctctatcttgcttacat |
20515970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 3961178 - 3961093
Alignment:
| Q |
180 |
tgagtattcttctcataaatacacatatgctctctatcttgcatacatttatgatctttctccctttgactccattattctcaaca |
265 |
Q |
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|||||||| || ||||||||||||||||| ||| | |||||| || || ||| | |||||||||| || ||||| |||||||||| |
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| T |
3961178 |
tgagtattattatcataaatacacatatgttctttgtcttgcttagatctatcagttttctcccttcgattccatgattctcaaca |
3961093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 3274554 - 3274451
Alignment:
| Q |
141 |
atcttttttcaatctatattcattcaatatgaattttaatgagtattcttctcataaatacacatatgctctctatcttgcatacatttatgatctttct |
240 |
Q |
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|
||||||| |||||||||||| ||||||||| ||| | | ||||||||||| ||| |||||||||||||||||||| |||| ||||| |||||| ||||| |
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| T |
3274554 |
atcttttatcaatctatatttattcaatataaatctatacgagtattcttcacatgaatacacatatgctctctattttgcttacatatatgatgtttct |
3274455 |
T |
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| Q |
241 |
ccct |
244 |
Q |
| |
|
|||| |
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| T |
3274454 |
ccct |
3274451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 40115758 - 40115690
Alignment:
| Q |
109 |
tataaatatgtcacttcattgtattccattttatcttttttcaatctatattcattcaatatgaatttt |
177 |
Q |
| |
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|||||||||||||||||||||||| | ||||| |||| ||||| |||||||||||||| ||||||| |
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| T |
40115758 |
tataaatatgtcacttcattgtatcttaatttattttttatcaattaatattcattcaataagaatttt |
40115690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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