View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11504_high_7 (Length: 342)
Name: NF11504_high_7
Description: NF11504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11504_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 35275741 - 35275423
Alignment:
| Q |
19 |
tatatagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
35275741 |
tatatagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaatccctggaccatct |
35275642 |
T |
|
| Q |
119 |
tctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagt |
218 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275641 |
tctgacctatcgacactcactagaatgtttcaaaacaaaagtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagt |
35275542 |
T |
|
| Q |
219 |
gtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275541 |
gtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaa |
35275442 |
T |
|
| Q |
319 |
tttagcaccctttgcttct |
337 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
35275441 |
tttagcaccctttgattct |
35275423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 327
Target Start/End: Complemental strand, 35289849 - 35289545
Alignment:
| Q |
23 |
tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg |
122 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35289849 |
tagcttggaggtccttcatgggtagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg |
35289750 |
T |
|
| Q |
123 |
acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| | || ||||| |
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|
| T |
35289749 |
acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttactgtcctttctggtgcacacaccataggtcaagcagaatgtca |
35289650 |
T |
|
| Q |
223 |
atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta |
322 |
Q |
| |
|
||||||||||| ||| ||| |||| ||| |||||||||||| |||||| || |||||||||||| |||||| ||||| ||||||||||||| ||||| |
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| T |
35289649 |
atttttcagaactcgtatatacaacgaaaccaacattgacacaaactttgcaaccttaagaaaatcaaattgtcctacttctggtggtgacataaatttg |
35289550 |
T |
|
| Q |
323 |
gcacc |
327 |
Q |
| |
|
||||| |
|
|
| T |
35289549 |
gcacc |
35289545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 35280508 - 35280241
Alignment:
| Q |
19 |
tatatagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatct |
118 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||| || |
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|
| T |
35280508 |
tatatagcttggaggtccttcatggatagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaacacccaaatcccttcaccagct |
35280409 |
T |
|
| Q |
119 |
tctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagt |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| | || | |
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|
| T |
35280408 |
tctgacctatccacactcactaaaatgtttcaaaacaaaggtctaacattaagagaccttacagtcctttctggtgcacacaccataggccaagcagaat |
35280309 |
T |
|
| Q |
219 |
gtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaa |
286 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||||| |||| |||||| || |||||||||||| |
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|
| T |
35280308 |
gtcaatttttccgaaatcgcatatacaatgaaaccaacatcgacacaaactttgcaaccttaagaaaa |
35280241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 327
Target Start/End: Complemental strand, 35307647 - 35307343
Alignment:
| Q |
23 |
tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg |
122 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
35307647 |
tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg |
35307548 |
T |
|
| Q |
123 |
acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca |
222 |
Q |
| |
|
|||| ||||| |||||||| |||||| | ||| |||||||| || |||||| ||||| || |||||||||||||||||||| ||| ||||| || |
|
|
| T |
35307547 |
acctttccactctcactacaatgttttcagccaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca |
35307448 |
T |
|
| Q |
223 |
atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta |
322 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||| |||||| || |||||||| ||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
35307447 |
atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctttctggtggtgacaccaattta |
35307348 |
T |
|
| Q |
323 |
gcacc |
327 |
Q |
| |
|
||||| |
|
|
| T |
35307347 |
gcacc |
35307343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 327
Target Start/End: Complemental strand, 35322648 - 35322344
Alignment:
| Q |
23 |
tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg |
122 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
35322648 |
tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg |
35322549 |
T |
|
| Q |
123 |
acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca |
222 |
Q |
| |
|
|||| ||||| ||||| | ||||||| | |||| |||||||| || |||||| ||||| || |||||||||||||||||||| ||| ||||| || |
|
|
| T |
35322548 |
acctttccactctcaccaaaatgtttacagacaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca |
35322449 |
T |
|
| Q |
223 |
atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta |
322 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||| |||||| || |||||||| ||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
35322448 |
atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaattaaattgtcctctttctggtggtgacaccaattta |
35322349 |
T |
|
| Q |
323 |
gcacc |
327 |
Q |
| |
|
||||| |
|
|
| T |
35322348 |
gcacc |
35322344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 286
Target Start/End: Complemental strand, 35311993 - 35311730
Alignment:
| Q |
23 |
tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg |
122 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| | | |
|
|
| T |
35311993 |
tagcttggaggaccctcatggacagtaccacttggaagaagagatgcaagaacagcaaatcaaagtgcagcaaatagccaaatccctagaccatccttta |
35311894 |
T |
|
| Q |
123 |
acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca |
222 |
Q |
| |
|
||||| ||| ||||||||| |||||| | ||| |||||||| || ||| || ||||| || |||||||||||||||||||| ||| ||||||| |
|
|
| T |
35311893 |
acctaaccagactcactacaatgtttttagccaagggtctaactgcaagtgatctcacagtactttctggtgcacacaccataggccaaggagagtgtcg |
35311794 |
T |
|
| Q |
223 |
atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaa |
286 |
Q |
| |
|
||| ||||||| ||||||| |||||||| |||||||||||| |||||| || |||||||||||| |
|
|
| T |
35311793 |
attgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaa |
35311730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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