View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11504_low_1 (Length: 621)

Name: NF11504_low_1
Description: NF11504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11504_low_1
NF11504_low_1
[»] chr4 (34 HSPs)
chr4 (42-602)||(1489001-1489558)
chr4 (39-602)||(12121097-12121657)
chr4 (42-480)||(1537526-1537964)
chr4 (16-294)||(1513352-1513627)
chr4 (16-221)||(1508021-1508226)
chr4 (46-447)||(546819-547220)
chr4 (288-480)||(1504870-1505062)
chr4 (267-371)||(8186959-8187063)
chr4 (44-238)||(8184031-8184225)
chr4 (42-235)||(1552771-1552967)
chr4 (44-239)||(1524486-1524678)
chr4 (43-236)||(7225886-7226079)
chr4 (44-237)||(7307764-7307957)
chr4 (59-239)||(53761772-53761949)
chr4 (188-368)||(1600467-1600647)
chr4 (555-602)||(1537428-1537475)
chr4 (43-106)||(55505238-55505301)
chr4 (188-238)||(1519143-1519193)
chr4 (187-239)||(532236-532288)
chr4 (46-209)||(640821-640984)
chr4 (164-230)||(659733-659799)
chr4 (44-104)||(558402-558462)
chr4 (43-106)||(644734-644797)
chr4 (61-240)||(8187090-8187269)
chr4 (311-382)||(55908585-55908656)
chr4 (189-235)||(570400-570446)
chr4 (133-235)||(1548428-1548530)
chr4 (169-239)||(55505108-55505178)
chr4 (45-106)||(553384-553445)
chr4 (267-372)||(1524353-1524458)
chr4 (266-372)||(553605-553711)
chr4 (496-602)||(1504754-1504860)
chr4 (44-106)||(1545677-1545739)
chr4 (43-92)||(570254-570303)
[»] chr8 (10 HSPs)
chr8 (48-447)||(18315065-18315464)
chr8 (52-237)||(27922420-27922605)
chr8 (130-388)||(32151291-32151546)
chr8 (44-238)||(34936164-34936358)
chr8 (189-245)||(21235607-21235663)
chr8 (63-238)||(17636402-17636576)
chr8 (188-235)||(28246299-28246346)
chr8 (43-94)||(28246438-28246489)
chr8 (49-116)||(44736444-44736511)
chr8 (43-92)||(21235461-21235510)
[»] chr3 (7 HSPs)
chr3 (46-239)||(51113781-51113974)
chr3 (54-239)||(13470732-13470917)
chr3 (44-239)||(51120893-51121088)
chr3 (46-106)||(514861-514921)
chr3 (63-239)||(51764440-51764616)
chr3 (188-235)||(1657299-1657346)
chr3 (43-95)||(1657154-1657206)
[»] chr2 (4 HSPs)
chr2 (44-239)||(45245085-45245280)
chr2 (311-367)||(32785647-32785703)
chr2 (311-382)||(1037521-1037592)
chr2 (188-238)||(32785773-32785823)
[»] chr6 (17 HSPs)
chr6 (52-239)||(6402772-6402959)
chr6 (54-239)||(6415880-6416065)
chr6 (45-235)||(9411260-9411450)
chr6 (61-239)||(19632360-19632538)
chr6 (63-239)||(6432084-6432260)
chr6 (52-239)||(7994182-7994369)
chr6 (45-95)||(28934954-28935004)
chr6 (61-206)||(6585270-6585415)
chr6 (119-237)||(6423196-6423314)
chr6 (181-239)||(6589323-6589381)
chr6 (189-235)||(12102315-12102361)
chr6 (188-235)||(11936279-11936326)
chr6 (188-235)||(11948259-11948306)
chr6 (52-106)||(10579870-10579924)
chr6 (45-239)||(14820598-14820792)
chr6 (52-237)||(6603204-6603389)
chr6 (169-233)||(14802365-14802429)
[»] chr7 (1 HSPs)
chr7 (45-239)||(15092151-15092345)
[»] chr1 (4 HSPs)
chr1 (44-230)||(9586543-9586729)
chr1 (45-206)||(7554393-7554554)
chr1 (39-145)||(29719017-29719123)
chr1 (43-93)||(43634082-43634132)
[»] chr5 (6 HSPs)
chr5 (73-232)||(41901542-41901701)
chr5 (45-233)||(38267562-38267750)
chr5 (132-209)||(20478112-20478189)
chr5 (169-237)||(41889556-41889624)
chr5 (44-104)||(12845497-12845557)
chr5 (46-106)||(32267381-32267441)
[»] scaffold0041 (1 HSPs)
scaffold0041 (47-209)||(39091-39253)
[»] scaffold0807 (1 HSPs)
scaffold0807 (183-237)||(1466-1520)


Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 42 - 602
Target Start/End: Complemental strand, 1489558 - 1489001
Alignment:
Q  42 tttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagc 141  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1489558 tttcaaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagc 1489459  T
Q  142 ccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgc 241  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489458 ccacggcaacacattgagattacacacagtgtttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgc 1489359  T
Q  242 acagcttctttcctaaagatcttcttaagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaata 341  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1489358 acagcttctttcctaaagatcttcttaagttcaaatgcctaatatcagaacatgtctttaaaacatggaaaataccttcttcagatatgttatagcaata 1489259  T
Q  342 actcaaattaagcaattgcaaattggggaaaagggcagcaatcatttctatgctttcatctcgtattcgtgaattggaaatcaaatggagagactttaat 441  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1489258 agtcaaattaagcaattgcaaattggggaaaagggcagcaatcatttctatgctttcatctcgtattcgtgaattcgaaatcaaatggagagactttaat 1489159  T
Q  442 tgagggatgacgacgaaagaattagaattgtctacactannnnnnnnnnnnnnngtgtatttcattttaatggaagaggctatggaggaaagccaacaaa 541  Q
    |||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||    
T  1489158 tgagggatgacgacgaaagaattagaattgtctacacta---ttttttttttttgtgtatttcattttaatggaagaggctatggaggaaagccaacaaa 1489062  T
Q  542 atgtgtcattgtcgtagtagtgagtgaggcagatggaggtgaggttagggaatctttggaa 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489061 atgtgtcattgtcgtagtagtgagtgaggcagatggaggtgaggttagggaatctttggaa 1489001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 39 - 602
Target Start/End: Complemental strand, 12121657 - 12121097
Alignment:
Q  39 atatttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaa 138  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |  ||| |||| ||||||| |||||||||||    
T  12121657 atatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaa 12121558  T
Q  139 agcccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 238  Q
    ||||||||||||||| ||||||||||  | |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121557 agcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T
Q  239 cgcacagcttctttcctaaagatcttcttaagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatatgttatagca 338  Q
     || ||||||| |||||||| | ||  |||||||||||||| ||||||| ||||||||| |||| || ||||||||||||||||| ||||||||||||||    
T  12121457 ggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatatgttatagca 12121358  T
Q  339 ataactcaaattaagcaattgcaaattggggaaaagggcagcaatcatttctatgctttcatctcgtattcgtgaattggaaatcaaatggagagacttt 438  Q
    | ||||||||| ||||||||||||||||||||||| || ||||||| |||  |||||||||||| |||  | || | | |||||||||||||||||||||    
T  12121357 aaaactcaaatcaagcaattgcaaattggggaaaacggaagcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatggagagacttt 12121258  T
Q  439 aattgagggatgacgacgaaagaattagaattgtctacactannnnnnnnnnnnnnngtgtatttcattttaatggaagaggctatggaggaaagccaac 538  Q
    |||||||   | || || || ||||||||||||||| |||||               |||| ||| ||| |||| ||| |||||||||||||||||||||    
T  12121257 aattgagtactaacaacaaaggaattagaattgtctgcacta---ttatttgtttgtgtgttttttattctaatagaaaaggctatggaggaaagccaac 12121161  T
Q  539 aaaatgtgtcattgtcgtagtagtgagtgaggcagatggaggtgaggttagggaatctttggaa 602  Q
    ||||| |||||    | |||||||||||||||| ||  ||||||||||||||||||||||||||    
T  12121160 aaaatatgtcaccaccatagtagtgagtgaggcggagagaggtgaggttagggaatctttggaa 12121097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 42 - 480
Target Start/End: Complemental strand, 1537964 - 1537526
Alignment:
Q  42 tttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagc 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |  | ||||   ||||||||| ||||||||||||    
T  1537964 tttcaaattgatctctcttagttgagtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagc 1537865  T
Q  142 ccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgc 241  Q
    ||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1537864 ccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccat 1537765  T
Q  242 acagcttctttcctaaagatcttcttaagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaata 341  Q
     |||||||   |||    | |   |||||||||||||||||| ||| ||||||||| ||||||| || |||||||||||||| |||||   | |||||||    
T  1537764 gcagcttccaacctcttaagccggttaagttcaaatgcctaagctcggaacatgtccttaaaacttgaaaaataccttcttcagatattggaaagcaata 1537665  T
Q  342 actcaaattaagcaattgcaaattggggaaaagggcagcaatcatttctatgctttcatctcgtattcgtgaattggaaatcaaatggagagactttaat 441  Q
    ||||||||||| |||||||||||| |||||||  | |||||||||||  | ||||| ||||| ||  | |  | | ||||||||||||||||||||||||    
T  1537664 actcaaattaaacaattgcaaattcgggaaaactgaagcaatcattttgaagcttttatctcttaaccattgactcgaaatcaaatggagagactttaat 1537565  T
Q  442 tgagggatgacgacgaaagaattagaattgtctacacta 480  Q
    |||||| |||| |  || || ||||||||||||||||||    
T  1537564 tgagggctgacaaataaggagttagaattgtctacacta 1537526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 1513627 - 1513352
Alignment:
Q  16 acatcaccacgcaccttaggaccatatttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaac 115  Q
    |||||||||  ||| |||| || ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| | || |||    
T  1513627 acatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgacaatacaac 1513528  T
Q  116 acccttccagtaagagttgcaaaagcccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctag 215  Q
       ||| ||||| |||||||||||||||||| |||||| ||||||||||  | |||||||| || | |||||||||| ||||||||||||||||||||||    
T  1513527 ---ctttcagtatgagttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctag 1513431  T
Q  216 tttgggaacttcaaagttcattccgcacagcttctttcctaaagatcttcttaagttcaaatgcctaatctcagaacat 294  Q
    |||||||||||||||||||||||||||||||| |||||||||| |  || ||| ||| |||||||||||||||||||||    
T  1513430 tttgggaacttcaaagttcattccgcacagctcctttcctaaatagtttgttatgtttaaatgcctaatctcagaacat 1513352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 1508226 - 1508021
Alignment:
Q  16 acatcaccacgcaccttaggaccatatttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaac 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||    |  ||    
T  1508226 acatcaccacgtaccttaggaccatatttcaaattgatctctcttagttgtgtgcatttttctagcgcatgcttcactcccatctcggtgactgcagcac 1508127  T
Q  116 acccttccagtaagagttgcaaaagcccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctag 215  Q
    | || ||||| | |||||||||||||||||| |||||| |||||||||||||||||||||| || | |||||| |||| |||||||||||||||||||||    
T  1508126 aaccatccagcacgagttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacacttctag 1508027  T
Q  216 tttggg 221  Q
    ||||||    
T  1508026 tttggg 1508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 46 - 447
Target Start/End: Original strand, 546819 - 547220
Alignment:
Q  46 aaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccac 145  Q
    ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| || ||||||  |||||||||| | || |||||||||||    
T  546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccac 546918  T
Q  146 ggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgcacag 245  Q
      |||| | ||||||| ||| | |||||||| || || ||| |||||  ||||||||||| ||| || | ||| ||||||||||||||||||||  | ||    
T  546919 aacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaatag 547018  T
Q  246 cttctttcctaaagatcttcttaagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaataactc 345  Q
     |||  | ||||| |  |   ||||||||||||||| |||| | ||||| || |||||||||   ||||||  ||||| |||||||||   ||||||||     
T  547019 gttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataactt 547118  T
Q  346 aaattaagcaattgcaaattggggaaaagggcagcaatcatttctatgctttcatctcgtattcgtgaattggaaatcaaatggagagactttaattgag 445  Q
    |||| ||||| ||||||||||||||| | || || || |||||  ||||||||||||| ||| | ||||||   |  ||||||||||||||| |||||||    
T  547119 aaatcaagcagttgcaaattggggaacatggaaggaaacattttgatgctttcatctcttatgcatgaatttttagccaaatggagagacttcaattgag 547218  T
Q  446 gg 447  Q
    ||    
T  547219 gg 547220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 288 - 480
Target Start/End: Complemental strand, 1505062 - 1504870
Alignment:
Q  288 agaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaataactcaaattaagcaattgcaaattggggaaaagggcagcaatcatt 387  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||| || ||||||| ||    
T  1505062 agaacatgtccttaaaacatggaaaataccttcttcagatatgttatggcaataactaaaattaaccaattgcaaattggggaaaacggaagcaatcgtt 1504963  T
Q  388 tctatgctttcatctcgtattcgtgaattggaaatcaaatggagagactttaattgagggatgacgacgaaagaattagaattgtctacacta 480  Q
    |  ||||||||||||||||  | || |||  |||||||||||||||||||||||||||||   || || || |||||||| ||||||||||||    
T  1504962 tggatgctttcatctcgtaaacatggattaaaaatcaaatggagagactttaattgagggcctacaacaaaggaattagacttgtctacacta 1504870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 8187063 - 8186959
Alignment:
Q  267 taagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaataactcaaattaagcaattgcaaattg 366  Q
    ||||||||||| |||||||||| ||||| |||| ||||| ||  ||||||||||||| ||||||| |||||||| |||||||| |||||| |||||||||    
T  8187063 taagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattg 8186964  T
Q  367 gggaa 371  Q
    |||||    
T  8186963 gggaa 8186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 8184225 - 8184031
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccc 143  Q
    ||||||||||| || | ||||||||||| |||||||||||||||||||||||||  |||||||   |   |||   ||||||||| |||| |||||||||    
T  8184225 tcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatttcacaattttccagtaacagttccaaaagccc 8184126  T
Q  144 acggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 238  Q
    ||  |||| | |||||||| || | |||| |   || | |||  |||||| ||||||||||||||| |||||||| |||||||||||||||||||    
T  8184125 acaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 1552967 - 1552771
Alignment:
Q  42 tttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaa---cacccttccagtaagagttgcaaa 138  Q
    ||||||||||||||||||||||||   ||| ||||||   |||||||||||||||||||| |||| || | ||   ||   ||| ||||| || ||||||    
T  1552967 tttcaaattgatctctcttagttgcaagcaattttctccgacatgcttcactcccttctcggtgacataataattacattgttctagtaacagctgcaaa 1552868  T
Q  139 agcccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 235  Q
    |||||||| |||  | |||| || |||   |||||||| || |||| |||||||| |||||| ||||||||||| |||||||||| |||||||||||    
T  1552867 agcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttca 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 1524678 - 1524486
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccc 143  Q
    ||||||| |||||||| ||||||||||| ||||||| |||||  ||||||||| ||||||||| ||   |||| |    || ||| ||||||||||||||    
T  1524678 tcaaattaatctctctcagttgtgtgcagttttctatcacataattcactcccctctctgtgacat---aacaactacgcaataacagttgcaaaagccc 1524582  T
Q  144 acggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    ||| |||| |  |||||| | | | |||||||| || | |||| |||||  |||||| |||||||| || |  |||||||||||||||||||||||    
T  1524581 acgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattcc 1524486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 7226079 - 7225886
Alignment:
Q  43 ttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcc 142  Q
    ||||||||||||||||| |||||  |||| ||||||| ||| ||||||| ||||||||| ||||  | |||||| | ||||||||| ||||||||||| |    
T  7226079 ttcaaattgatctctctcagttgcttgcagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtc 7225980  T
Q  143 cacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcat 236  Q
    |||  |||| | |||| || ||||  |||  || ||| | |||  |||||| |||||||||||| || || | || | ||||||||||||||||    
T  7225979 cacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttcat 7225886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 7307764 - 7307957
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccc 143  Q
    |||||||||| || || ||||| ||||| ||||||| ||||||||||| |||  ||   |||| | ||||||| ||||||||||| || ||||||||||     
T  7307764 tcaaattgatttccctcagttgcgtgcagttttctaccacatgcttcaatccagtcatcgtgacaataaaacaaccttccagtaacaggtgcaaaagcct 7307863  T
Q  144 acggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 237  Q
    ||  |||| | ||||||| | ||  |||| ||| || | ||| | |||||||||||||||||| || || | ||||||||||| ||||||||||    
T  7307864 acaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 239
Target Start/End: Complemental strand, 53761949 - 53761772
Alignment:
Q  59 ttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattga 158  Q
    ||||||||||||| ||||||  |||||| ||||||||||| || |||| ||||  |||   || |||||| | ||||||||||||||| |||  | | ||    
T  53761949 ttagttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcga 53761851  T
Q  159 gattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    |||  |||| |||||||  |||||||| || ||| |||||||||||||| | ||||| ||||||||| |||||||||||||    
T  53761850 gat--cacagagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattcc 53761772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 368
Target Start/End: Original strand, 1600467 - 1600647
Alignment:
Q  188 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgcacagcttctttcctaaagatcttcttaagttcaaatgcctaatctc 287  Q
    |||||||||||||||||||||| || |||||  ||||||||||||||||||| | ||||||| ||  | || |      |||||||||||| ||||| |     
T  1600467 ttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaatttt 1600566  T
Q  288 agaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaataactcaaattaagcaattgcaaattggg 368  Q
    |||| || || ||||||| ||  ||||||||||||| |||||||||  ||||   ||||||| ||||| ||||||||||||    
T  1600567 agaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattggg 1600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Complemental strand, 1537475 - 1537428
Alignment:
Q  555 gtagtagtgagtgaggcagatggaggtgaggttagggaatctttggaa 602  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  1537475 gtagtagtgagtgaggcagagggaggtgaggttagggaatctttggaa 1537428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 55505301 - 55505238
Alignment:
Q  43 ttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtga 106  Q
    ||||| ||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||    
T  55505301 ttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtga 55505238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 1519193 - 1519143
Alignment:
Q  188 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 238  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  1519193 ttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 532236 - 532288
Alignment:
Q  187 tttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  532236 tttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattcc 532288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 640821 - 640984
Alignment:
Q  46 aaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccac 145  Q
    ||||||| |||||||| || | |||| ||||||| |||||| ||||||||||||| ||| | || |  |||  |||||||||| || |||||||| ||||    
T  640821 aaattgacctctcttaattctttgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccac 640920  T
Q  146 ggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacac 209  Q
    |||||  | ||||| | ||  | |||||||| || | ||| ||||||| |||||||||||||||    
T  640921 ggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacac 640984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 659733 - 659799
Alignment:
Q  164 cacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaa 230  Q
    |||| |||||||| |  |||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  659733 cacatagtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 558402 - 558462
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgt 104  Q
    |||||||||| ||||| | ||||||||| ||||||||||||||||||||||| || |||||    
T  558402 tcaaattgatttctctcatttgtgtgcagttttctagcacatgcttcactcctttatctgt 558462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 644734 - 644797
Alignment:
Q  43 ttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtga 106  Q
    ||||||| ||||||||| ||||||||||||||||| | |||||| |||||||| ||||| ||||    
T  644734 ttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtga 644797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 8187269 - 8187090
Alignment:
Q  61 agttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgaga 160  Q
    ||||| ||||| |||| || ||||| | ||||||||||| ||||||  |||  |||   ||||||||| |  |||||||||||||  |||| | |||| |    
T  8187269 agttgcgtgcagttttttaccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaa 8187170  T
Q  161 ttacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccg 240  Q
    || || | |||||||  || | |||  |||||| ||||||||||||||| || ||||||| || ||||||||||||||||    
T  8187169 ttgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccg 8187090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 55908656 - 55908585
Alignment:
Q  311 aaataccttcttcggatatgttatagcaataactcaaattaagcaattgcaaattggggaaaagggcagcaa 382  Q
    ||||||||||||| |||||||||| |||  | ||||||| ||| ||||||||||||||||||| || |||||    
T  55908656 aaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaa 55908585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 570400 - 570446
Alignment:
Q  189 tgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 235  Q
    ||||||||||||||||||||| || |||||| |||||||||||||||    
T  570400 tgtatatgacaagttcaacacctcgagtttgagaacttcaaagttca 570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 1548530 - 1548428
Alignment:
Q  133 tgcaaaagcccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagt 232  Q
    |||||||||||||  |||| | ||||||| |||   |||||||| || | || | |||||| ||||||||||||||| || |||||||||| ||||||||    
T  1548530 tgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 1548431  T
Q  233 tca 235  Q
    |||    
T  1548430 tca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 55505178 - 55505108
Alignment:
Q  169 agtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    |||||| | |||| ||| ||||||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  55505178 agtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattcc 55505108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 553384 - 553445
Alignment:
Q  45 caaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtga 106  Q
    ||||| ||||||||| ||||||||||| ||||||| |||||| |||||||| || |||||||    
T  553384 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtga 553445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 267 - 372
Target Start/End: Complemental strand, 1524458 - 1524353
Alignment:
Q  267 taagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaataactcaaattaagcaattgcaaattg 366  Q
    |||||||||||||||||  | | ||||| || ||||||| || | |||||||||||| |||| ||   |||||||||| |||| |||||  |||||||||    
T  1524458 taagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagatacgtatgagcaataacttaaatcaagcagctgcaaattg 1524359  T
Q  367 gggaaa 372  Q
    ||||||    
T  1524358 gggaaa 1524353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 372
Target Start/End: Original strand, 553605 - 553711
Alignment:
Q  266 ttaagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaataactcaaattaagcaattgcaaatt 365  Q
    ||||||||||||| ||||| | | |||||||| |||||||||| | || | ||||||| ||||  |  ||| |||| ||||||| |||||  ||||||||    
T  553605 ttaagttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagatacatcgtaggaatatctcaaatcaagcatctgcaaatt 553704  T
Q  366 ggggaaa 372  Q
    |||||||    
T  553705 ggggaaa 553711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 602
Target Start/End: Complemental strand, 1504860 - 1504754
Alignment:
Q  496 gtgtatttcattttaatggaagaggctatggaggaaagccaacaaaatgtgtcattgtcgtagtagtgagtgaggcagatggaggtgaggttagggaatc 595  Q
    ||||||||||   ||||||| ||||| | |||||||| |||||||||| |||| |      |||||||||  |||| || ||||||||||||||||||||    
T  1504860 gtgtatttcagactaatggaggaggcaagggaggaaatccaacaaaatatgtcgtcacaaaagtagtgagcaaggcggagggaggtgaggttagggaatc 1504761  T
Q  596 tttggaa 602  Q
    |||||||    
T  1504760 tttggaa 1504754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 1545677 - 1545739
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtga 106  Q
    ||||||||||| |||||||||||||||| |||| || | |||  ||||||||||||| |||||    
T  1545677 tcaaattgatcactcttagttgtgtgcagttttttaccgcatctttcactcccttctatgtga 1545739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 570254 - 570303
Alignment:
Q  43 ttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcac 92  Q
    |||||||||||||| || ||||||||||| ||||||| |||||| |||||    
T  570254 ttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcac 570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 48 - 447
Target Start/End: Complemental strand, 18315464 - 18315065
Alignment:
Q  48 attgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacgg 147  Q
    ||||| |||| | ||||||||||| ||||||| ||||| |||  |||| |||||||||| || | |||| | ||||| ||| ||||||||||||| |||     
T  18315464 attgagctctatcagttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacga 18315365  T
Q  148 caacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgcacagct 247  Q
    |||| | ||||||| ||| | |||| ||| || | ||| ||||||| ||||||||||||||| || ||||||||||||| |||||||||||| |  ||||    
T  18315364 caactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagct 18315265  T
Q  248 tctttcctaaagatcttcttaagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatatgttatagcaataactcaa 347  Q
    || ||| | ||   |    ||||||||| || ||||||||||||||  |   |||||| ||  ||||||||||||| | |||||||| ||| || |||||    
T  18315264 tcattcttgaatcacgagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctcaa 18315165  T
Q  348 attaagcaattgcaaattggggaaaagggcagcaatcatttctatgctttcatctcgtattcgtgaattggaaatcaaatggagagactttaattgaggg 447  Q
    || |||||| |||||||||||||||| || || ||  ||||  |||||||| |||| ||  | ||||||| || | ||| ||||||||||||||||||||    
T  18315164 atcaagcaactgcaaattggggaaaatggaagaaaatattttgatgctttcctctcttaaccatgaattgcaagtaaaacggagagactttaattgaggg 18315065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 27922420 - 27922605
Alignment:
Q  52 atctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaac 151  Q
    |||| ||| ||||| ||||| ||||||| |||||| ||||||||||||| |||||||| |  |||   ||| ||| | | || |||||||||||  ||||    
T  27922420 atctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaac 27922519  T
Q  152 acattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 237  Q
     | ||||||| | | | |||| ||| || | ||||||||||||||||||||||||||| || | ||||||||||||||||||||||    
T  27922520 tctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 388
Target Start/End: Original strand, 32151291 - 32151546
Alignment:
Q  130 agttgcaaaagcccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaa 229  Q
    ||||||||||||||||  |||| | ||||||| ||| | |||||||| || | ||   ||||| |||||||||| ||||| || || |||| |||||| |    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcga 32151390  T
Q  230 agttcattccgcacagcttctttcctaaagatcttcttaagttcaaatgcctaatctcagaacatgtctttaaaacatggaaaataccttcttcggatat 329  Q
    |||||||||| | |||||||     |||| | |   | || |||||||||||||||||||| |||    ||||||| ||  |||| |||||||| |||||    
T  32151391 agttcattccacgcagcttcacatgtaaacagccggtgaaattcaaatgcctaatctcagagcat---cttaaaacttgacaaattccttcttcagatat 32151487  T
Q  330 gttatagcaataactcaaattaagcaattgcaaattggggaaaagggcagcaatcattt 388  Q
    ||||| |||| | ||||||| ||||| ||||||||| ||||||| || ||||| |||||    
T  32151488 gttatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattt 32151546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 34936358 - 34936164
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccc 143  Q
    ||||||||||||| || | ||||||||| ||||| | |||| |||  ||||||||||| |||| || | ||||   ||  ||||| ||||||||||||||    
T  34936358 tcaaattgatctccctcaattgtgtgcaattttcaaccacacgctcaactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagccc 34936259  T
Q  144 acggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 238  Q
    ||| |||| | ||| |||  || | |||||||  || | |||  ||||||||||||||| |||||| |||||||| ||||| |||||| ||||||    
T  34936258 acgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaagatcattc 34936164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 21235607 - 21235663
Alignment:
Q  189 tgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgcacag 245  Q
    ||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||    
T  21235607 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactccacacag 21235663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 17636576 - 17636402
Alignment:
Q  63 ttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgagatt 162  Q
    ||||||||| ||||||||||||||| ||||||| ||||| |||| ||||| |||   ||| ||| | | ||||||||| | | | |||| | |||||||     
T  17636576 ttgtgtgcaattttctagcacatgcctcactcctttctc-gtgacattaacacaatattcaagtgacaattgcaaaagtctaagacaactctttgagatc 17636478  T
Q  163 acacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 238  Q
    ||| ||| || ||| |||| |||   ||| | ||||||||||||||| || | |||||||||||||||||||||||    
T  17636477 acatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattc 17636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 28246346 - 28246299
Alignment:
Q  188 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 235  Q
    ||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  28246346 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 28246299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 28246489 - 28246438
Alignment:
Q  43 ttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactc 94  Q
    |||||||||| |||||| ||||||||||||||||| | ||||||| ||||||    
T  28246489 ttcaaattgacctctctcagttgtgtgcatttttcaaccacatgcgtcactc 28246438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 44736444 - 44736511
Alignment:
Q  49 ttgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaaca 116  Q
    |||||||||||||||||||| || |||||||  ||||| ||||||||||||  ||||| |||| ||||    
T  44736444 ttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataaca 44736511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 21235461 - 21235510
Alignment:
Q  43 ttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcac 92  Q
    |||||||||||||| || ||||||||||| ||||||| |||||| |||||    
T  21235461 ttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcac 21235510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 51113974 - 51113781
Alignment:
Q  46 aaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccac 145  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||   ||||   || |||||| ||||||||||||||||    
T  51113974 aaattaatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccac 51113875  T
Q  146 ggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
      |||| | | ||||| ||| | |||||||| || | |||  |||||| ||||||||  ||||| || ||||||||| ||||||||||||||||    
T  51113874 aacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattcc 51113781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 13470917 - 13470732
Alignment:
Q  54 ctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacac 153  Q
    ||||||||| |||||||| || |||| |||||| ||||||||||  ||||||| ||||  |||   ||| ||||| ||||||||||||||||  |||  |    
T  13470917 ctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattc 13470818  T
Q  154 attgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
     ||||||| | | | |||||||  || ||||| ||||||| ||||||||||||||| || || ||||||||  |||||||||||||    
T  13470817 tttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattcc 13470732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 51121088 - 51120893
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccc 143  Q
    |||| |||||| |||| | ||||||||| ||||||| |||||| |||||||| || | ||||| ||  ||||| | ||| ||  | | ||||||||||||    
T  51121088 tcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagccc 51120989  T
Q  144 acggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    ||| |||| | ||||||||||| | ||| |||| || | |||  ||||||  |||||||||||||| || | |||| |||||||||||||||||||    
T  51120988 acgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcc 51120893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 514921 - 514861
Alignment:
Q  46 aaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtga 106  Q
    |||||||||||||| ||| ||||||| ||||  | |||||||||||||||| |||||||||    
T  514921 aaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtga 514861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 51764616 - 51764440
Alignment:
Q  63 ttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgagatt 162  Q
    ||||||||| ||||| | |||||| ||||||||||||||  ||| ||||  |||   ||||||||| |||||||||||||| |  |||  | |||||||     
T  51764616 ttgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatc 51764517  T
Q  163 acacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
     || | |||||||  || | ||| |||||| |||||||||  ||||| || || || |||||| |||||||||||||    
T  51764516 gcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattcc 51764440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 1657299 - 1657346
Alignment:
Q  188 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 235  Q
    ||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  1657299 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 1657154 - 1657206
Alignment:
Q  43 ttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcc 95  Q
    ||||||| || |||||| ||||||||||||||||| | ||||||| |||||||    
T  1657154 ttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcc 1657206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 45245280 - 45245085
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccc 143  Q
    |||||||||||||| | ||||||||||| ||||||| |||||| ||||||||||| ||||||| || | ||||   || || ||| ||||||||||||||    
T  45245280 tcaaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccc 45245181  T
Q  144 acggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    ||| |||| | ||||||| |||   |||||||| || | |||  |||| | |||||| |||||||| || ||||| |||||||||||||| |||||    
T  45245180 acgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattcc 45245085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 32785703 - 32785647
Alignment:
Q  311 aaataccttcttcggatatgttatagcaataactcaaattaagcaattgcaaattgg 367  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||| | |||||||||||    
T  32785703 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 32785647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 1037592 - 1037521
Alignment:
Q  311 aaataccttcttcggatatgttatagcaataactcaaattaagcaattgcaaattggggaaaagggcagcaa 382  Q
    ||||||||||||| |||||||||| |||  | ||||||| ||| ||||||||||||||||||| || |||||    
T  1037592 aaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaa 1037521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 32785823 - 32785773
Alignment:
Q  188 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 238  Q
    |||||| ||||||||||||||| |||||||||||| ||| |||||||||||    
T  32785823 ttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattc 32785773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 6402772 - 6402959
Alignment:
Q  52 atctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaac 151  Q
    |||||||| |||||||| || ||||||| |||||| ||| ||||||| ||||||| |||| ||||  ||  || ||| |||| |||||||||||  |||     
T  6402772 atctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaat 6402871  T
Q  152 acattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
     | ||||||| ||| | |||||||| || | ||| || |||| ||||||||||||||||||||||| ||||||| ||||||| |||||    
T  6402872 tctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattcc 6402959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 6415880 - 6416065
Alignment:
Q  54 ctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacac 153  Q
    |||||||||||||||||| || |||| |||||| |||||||||   ||||||| ||||  |||   ||| ||||| |||||||||||||| |  |||  |    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 6415979  T
Q  154 attgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
     ||||||| ||| | || ||||  || ||||| ||||||| ||||||||||||||| || || ||||||||| |||||| ||||||    
T  6415980 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattcc 6416065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 235
Target Start/End: Original strand, 9411260 - 9411450
Alignment:
Q  45 caaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccca 144  Q
    ||||||||||||| | |||||   ||| ||| ||| ||||||| |||||||||| ||| ||| ||||  ||| | || |||||| ||||||||||| |||    
T  9411260 caaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcca 9411359  T
Q  145 cggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 235  Q
    || |||  | |||||||  || | ||| |||| |||  ||||  ||||||||||||||||||||| || || |||||||| ||||||||||    
T  9411360 cgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaagttca 9411450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 19632360 - 19632538
Alignment:
Q  61 agttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgaga 160  Q
    |||||| |||| ||||||| ||| || ||||||||||||||||||| ||||  |||   || |||||||||||||||||||||||  |||  | ||||||    
T  19632360 agttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgaga 19632459  T
Q  161 ttacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    | ||| | |||   || || | ||| |||||||| ||||||| |||||| ||||| |||||||||  |||||| |||||    
T  19632460 tcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattcc 19632538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 6432084 - 6432260
Alignment:
Q  63 ttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgagatt 162  Q
    ||||||||||||||||| |||| | ||||||||||||| ||||| ||||  |||    | ||| || ||||||| ||||||||  |||  | || ||||     
T  6432084 ttgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattctttaagatc 6432183  T
Q  163 acacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    ||| | |||||||| || | |||  |||||| ||||||||||||||| |  || |||||||||||||||||||||||    
T  6432184 acataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattcc 6432260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 7994369 - 7994182
Alignment:
Q  52 atctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaac 151  Q
    |||||| | ||||| ||||| ||||||| |||||| |||||||||| ||| || | || |  |||   ||| ||||| ||||||||||| |||   |||     
T  7994369 atctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaat 7994270  T
Q  152 acattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
     | ||||||| ||| | ||||||||||| |||||  |||||| ||||| ||||||||| ||||| || |||||| |||||||||||||    
T  7994269 tctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcc 7994182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 28934954 - 28935004
Alignment:
Q  45 caaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcc 95  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  28934954 caaatagatctctcttagttgtgtgcaattttctaccacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 6585415 - 6585270
Alignment:
Q  61 agttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgaga 160  Q
    |||||||||||  |||||| |||||| |||| |||||||||||||| |||   ||| |||| |||||| |||| ||||||| ||   |||| | ||||||    
T  6585415 agttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 6585316  T
Q  161 ttacacacagtgtttcgtcgttaacatttgtatatgacaagttcaa 206  Q
    | ||| | |||||||| || | ||| ||||||| ||||||||||||    
T  6585315 tcacatagagtgtttcatcatcaacctttgtatctgacaagttcaa 6585270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 6423196 - 6423314
Alignment:
Q  119 cttccagtaagagttgcaaaagcccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagttt 218  Q
    |||| ||||| |||||||||| |||||  |||| | |||||||  || | |||||||  ||| ||||  |||||| ||||||||||||||| || || ||    
T  6423196 cttcaagtaatagttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagctt 6423295  T
Q  219 gggaacttcaaagttcatt 237  Q
    |||||||| ||||||||||    
T  6423296 gggaacttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 6589381 - 6589323
Alignment:
Q  181 ttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    ||||||||||||| ||||||||||||||| || ||  |||||||| |||||||||||||    
T  6589381 ttaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattcc 6589323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 12102315 - 12102361
Alignment:
Q  189 tgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 235  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 11936326 - 11936279
Alignment:
Q  188 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 235  Q
    ||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  11936326 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 11948306 - 11948259
Alignment:
Q  188 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 235  Q
    ||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  11948306 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11948259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 10579924 - 10579870
Alignment:
Q  52 atctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtga 106  Q
    |||||||| ||||||||||| ||||||| |||||| || |||||||||| |||||    
T  10579924 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtga 10579870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 239
Target Start/End: Original strand, 14820598 - 14820792
Alignment:
Q  45 caaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccca 144  Q
    |||||| |||||||| || |||||||| |||| || |||||| ||||| ||||||||||||| || |  |||   ||| ||||| | | |||||||||||    
T  14820598 caaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccca 14820697  T
Q  145 cggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    |  |||  | | ||||| | | | |||||||| |  | ||| ||||||| ||| ||||||||||| ||||  ||||||||| ||||||| |||||    
T  14820698 caacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattcc 14820792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 6603389 - 6603204
Alignment:
Q  52 atctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaac 151  Q
    |||| ||| |||||| |||| ||||||| |||||| |||||||| |||||||||| || | ||||   || || ||| |||| |||||||||| | ||||    
T  6603389 atctttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaac 6603290  T
Q  152 acattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 237  Q
     | |||||||  || | | |||||| || | ||||  ||||| || ||||| |||||| | ||| ||||||| | |||||||||||    
T  6603289 tctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagttcatt 6603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 14802365 - 14802429
Alignment:
Q  169 agtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagtt 233  Q
    |||||||| || | ||| ||||||| |||||| ||||||||||| |  |||||||||||||||||    
T  14802365 agtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 15092345 - 15092151
Alignment:
Q  45 caaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccca 144  Q
    |||||| |||||||| | ||||||||| |||||||||||||| |||||||||   ||||||| |||| ||||   ||| ||||| |||||||||||||||    
T  15092345 caaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagccca 15092246  T
Q  145 cggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 239  Q
    |  |||  | |||||||  || | |||||||  || ||||| ||||| | |||||| |||||||| || || | ||||||| |||||||||||||    
T  15092245 caacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcattcc 15092151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 230
Target Start/End: Original strand, 9586543 - 9586729
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccc 143  Q
    |||||| ||| ||| |||| |||||||| ||||||| |||| |||||| ||| ||   ||||| || | ||||   || | |||| || |||||||| ||    
T  9586543 tcaaatcgatttcttttagatgtgtgcaattttctaccacacgcttcaatccattgcttgtgacatgataacaatttttctgtaaaagatgcaaaagtcc 9586642  T
Q  144 acggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaa 230  Q
    ||| |||  ||||||| | ||| | |||||||| || ||||||| ||||||||||||||||||||| ||||| ||||| ||||||||    
T  9586643 acgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggggacttcaaa 9586729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 7554393 - 7554554
Alignment:
Q  45 caaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccca 144  Q
    |||||| |||||| | ||| | ||||| ||||||| |||||||||||||||||| ||||||| ||||  ||| |||| |||||| ||||| ||||| |||    
T  7554393 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtcca 7554492  T
Q  145 cggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaa 206  Q
    |  |||| | ||||||| | | | |||| ||| || | |||| |||||||||| ||||||||    
T  7554493 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 29719123 - 29719017
Alignment:
Q  39 atatttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaa 138  Q
    |||| ||||||||||||| || |||||  |||| ||||  | |||||| |||||||| |||||||||| ||| | ||| | ||||||||| | |||||||    
T  29719123 atatctcaaattgatctccctcagttgcttgcagttttgaaccacatgtttcactccattctctgtgacattcatacaactttccagtaacaattgcaaa 29719024  T
Q  139 agcccac 145  Q
    || ||||    
T  29719023 aggccac 29719017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 43634082 - 43634132
Alignment:
Q  43 ttcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcact 93  Q
    ||||| |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  43634082 ttcaagttgatctctcttagttgtctgcaattttctaacacgtgcttcact 43634132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 41901701 - 41901542
Alignment:
Q  73 ttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgagattacacacagtg 172  Q
    ||||||| |||||||||||||||||||| ||||| || |  |||  |||  ||| | | || |||||| ||||  |||| | ||||||| | | | ||||    
T  41901701 ttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaagtg 41901602  T
Q  173 tttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagt 232  Q
     ||| || | ||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  41901601 cttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 38267750 - 38267562
Alignment:
Q  45 caaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagccca 144  Q
    ||||||||||||||| |||| |||||| ||||  | ||||||| ||||||||||||| |||| |||   |||   || |||  | |||| ||||||||||    
T  38267750 caaattgatctctctgagttttgtgcagtttttgaccacatgcatcactcccttctcggtgacattcgtacaaagttgcagcgacagtttcaaaagccca 38267651  T
Q  145 cggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagtt 233  Q
    |||||   | ||||||||||| | ||||| || || | |||  |||||| || ||||| |||||| || || |||||||||||||||||    
T  38267650 cggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 20478189 - 20478112
Alignment:
Q  132 ttgcaaaagcccacggcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacac 209  Q
    ||||||||||||||  |||  | ||||||| ||| | | ||||||||| | |||||||||||||||||||||||||||    
T  20478189 ttgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacac 20478112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 41889624 - 41889556
Alignment:
Q  169 agtgtttcgtcgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 237  Q
    |||||||| || | ||| ||||||||||| ||||||||||| || | ||||||||||| ||||||||||    
T  41889624 agtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatt 41889556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 12845497 - 12845557
Alignment:
Q  44 tcaaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgt 104  Q
    |||||||||||||||| |  | |||||||||| ||| ||| ||| ||||||||||||||||    
T  12845497 tcaaattgatctctctcaactttgtgcattttgctaccacttgcctcactcccttctctgt 12845557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 32267381 - 32267441
Alignment:
Q  46 aaattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtga 106  Q
    ||||| |||| ||| ||||| ||||| |||||||  ||||||||||||||||||| |||||    
T  32267381 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtga 32267441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 39091 - 39253
Alignment:
Q  47 aattgatctctcttagttgtgtgcatttttctagcacatgcttcactcccttctctgtgaaattaaaacacccttccagtaagagttgcaaaagcccacg 146  Q
    |||| |||||||| ||||| ||||| || | || |||||| ||||||||||||  ||||| |  | ||||   ||||||||  || |||||||||||||     
T  39091 aattaatctctctcagttgcgtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccact 39190  T
Q  147 gcaacacattgagattacacacagtgtttcgtcgttaacatttgtatatgacaagttcaacac 209  Q
     |||| | ||||||| ||| | |||||||| || ||||| |||||| ||| ||||||||||||    
T  39191 acaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacac 39253  T

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Target: scaffold0807 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 1520 - 1466
Alignment:
Q  183 aacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 237  Q
    ||||||||||| |||||||| |||||| ||||| || |||||| |||||||||||    
T  1520 aacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatt 1466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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