View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11504_low_2 (Length: 429)

Name: NF11504_low_2
Description: NF11504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11504_low_2
NF11504_low_2
[»] chr1 (2 HSPs)
chr1 (167-296)||(25524089-25524216)
chr1 (18-102)||(25523877-25523963)
[»] chr3 (1 HSPs)
chr3 (217-271)||(19657176-19657230)
[»] chr6 (2 HSPs)
chr6 (217-274)||(9485500-9485557)
chr6 (219-275)||(9476454-9476510)
[»] scaffold0055 (6 HSPs)
scaffold0055 (210-256)||(13432-13478)
scaffold0055 (210-246)||(13096-13132)
scaffold0055 (210-246)||(33824-33860)
scaffold0055 (210-246)||(52996-53032)
scaffold0055 (210-246)||(54889-54925)
scaffold0055 (210-246)||(68532-68568)
[»] scaffold0052 (7 HSPs)
scaffold0052 (210-256)||(71057-71103)
scaffold0052 (210-246)||(20024-20060)
scaffold0052 (210-246)||(29296-29332)
scaffold0052 (210-246)||(49904-49940)
scaffold0052 (210-246)||(52495-52531)
scaffold0052 (210-246)||(62204-62240)
scaffold0052 (210-246)||(71403-71439)
[»] scaffold0021 (1 HSPs)
scaffold0021 (210-246)||(48166-48202)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 25524089 - 25524216
Alignment:
Q  167 ataacaaaggatgtgcaagatttttgtnnnnnnntagtcgtgtcccgtagcattacaagggcacaagtttttccgagaagtgaccgacacaactttttga 266  Q
    ||||||||||||||||||| |||||||       |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  25524089 ataacaaaggatgtgcaag-tttttgtaaaaaaatagtcgtg-cccgtagcgttacaagggcacaagttttttcgagaagtgaccgacacaactttttga 25524186  T
Q  267 ctagctacgttgtccataaataaaattaca 296  Q
    |||||||| |||||||||||||||||||||    
T  25524187 ctagctacattgtccataaataaaattaca 25524216  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 25523877 - 25523963
Alignment:
Q  18 aaaaaggaggcgaaaaaataaaagcaattgaagaaacagtttacgtagctgaag--aaatacacaaaaggatgtgcaagattttgtg 102  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  25523877 aaaaaggaggcgcaaaaataaaagcaattgaagaaacagttttcgtagctgaagaaaaatacacaaaaggatgtgcaagattttgtg 25523963  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 19657230 - 19657176
Alignment:
Q  217 cattacaagggcacaagtttttccgagaagtgaccgacacaactttttgactagc 271  Q
    ||||||||||||||||||||||| |||||| |||| ||||  |||||||||||||    
T  19657230 cattacaagggcacaagtttttctgagaagggaccaacacggctttttgactagc 19657176  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 9485557 - 9485500
Alignment:
Q  217 cattacaagggcacaagtttttccgagaagtgaccgacacaactttttgactagctac 274  Q
    |||||||||||||||||||||| ||| ||| |||||||||  |||| |||||||||||    
T  9485557 cattacaagggcacaagttttttcgataagagaccgacacggctttatgactagctac 9485500  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 9476454 - 9476510
Alignment:
Q  219 ttacaagggcacaagtttttccgagaagtgaccgacacaactttttgactagctacg 275  Q
    |||||||||||||||| |||||||| || || || ||| ||||||||||||||||||    
T  9476454 ttacaagggcacaagtgtttccgagtagggaacggcacgactttttgactagctacg 9476510  T

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Target: scaffold0055 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 13478 - 13432
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaagtgaccgacac 256  Q
    |||| ||| |||||||||||||||||||||||||||| |||| ||||    
T  13478 cccgcagcgttacaagggcacaagtttttccgagaagggaccaacac 13432  T

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Target: scaffold0055; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 13132 - 13096
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  13132 cccgcagcgttacaagggcacaagtttttccgagaag 13096  T

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Target: scaffold0055; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 33824 - 33860
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  33824 cccgcagcgttacaagggcacaagtttttccgagaag 33860  T

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Target: scaffold0055; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 52996 - 53032
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  52996 cccgcagcgttacaagggcacaagtttttccgagaag 53032  T

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Target: scaffold0055; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 54889 - 54925
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  54889 cccgcagcgttacaagggcacaagtttttccgagaag 54925  T

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Target: scaffold0055; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 68532 - 68568
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  68532 cccgcagcgttacaagggcacaagtttttccgagaag 68568  T

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Target: scaffold0052 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 71057 - 71103
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaagtgaccgacac 256  Q
    |||| ||| |||||||||||||||||||||||||||| |||| ||||    
T  71057 cccgcagcgttacaagggcacaagtttttccgagaagggaccaacac 71103  T

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Target: scaffold0052; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 20024 - 20060
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  20024 cccgcagcgttacaagggcacaagtttttccgagaag 20060  T

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Target: scaffold0052; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 29296 - 29332
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  29296 cccgcagcgttacaagggcacaagtttttccgagaag 29332  T

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Target: scaffold0052; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 49904 - 49940
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  49904 cccgcagcgttacaagggcacaagtttttccgagaag 49940  T

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Target: scaffold0052; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 52495 - 52531
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  52495 cccgcagcgttacaagggcacaagtttttccgagaag 52531  T

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Target: scaffold0052; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 62240 - 62204
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  62240 cccgcagcgttacaagggcacaagtttttccgagaag 62204  T

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Target: scaffold0052; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 71403 - 71439
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  71403 cccgcagcgttacaagggcacaagtttttccgagaag 71439  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 48166 - 48202
Alignment:
Q  210 cccgtagcattacaagggcacaagtttttccgagaag 246  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  48166 cccgcagcgttacaagggcacaagtttttccgagaag 48202  T

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