View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11504_low_5 (Length: 365)
Name: NF11504_low_5
Description: NF11504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11504_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 3829260 - 3829606
Alignment:
| Q |
1 |
atggaatctggccaagtttgtaattaacaaaggggccaccaactccataaaattgaatctttgatttaatcgtttgagtaggagagctgcaaatagttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3829260 |
atggaatctggccaagtttgtaattaacaaaggggccaccaactccataaaattgaatctttgatttaatcgtttgagtaggagagctgcaaatagttag |
3829359 |
T |
|
| Q |
101 |
atcgagtaagttaaaatgcaggccaattattaatgaagattaattcctgtagttcaatttgtggaagaatccttatatataaatnnnnnnnnnnnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3829360 |
atcgagtaagttaaaatgcaggccaattattaatgaagattaattcctctagttcaatttgtggaagaatccttatatataaatacacacacaccctcac |
3829459 |
T |
|
| Q |
201 |
nnnntttaacataaggaacaaaacatcgtttacatttacattaagcaaacatgacttcttctccttgtaaattctacaccatctttctttttcttagctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3829460 |
acactttaacataaggaacaaaacatcgtttacatttacattaagcaaacatgacttcttctccttgtaaattctacaccatctttctttttcttagctt |
3829559 |
T |
|
| Q |
301 |
tgcactcctccttttctccacattgggtaagactatatgattaagct |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3829560 |
tgcactcctccttttctccacattgggtaagactatatgattaagct |
3829606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 3868352 - 3868702
Alignment:
| Q |
1 |
atggaatctggccaagtttgtaattaacaaaggggccaccaactccataaaattgaatctttgatttaatcgtttgagtaggagagctgcaaatagtta- |
99 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
3868352 |
atggaatctttccaagtttgtaattaacaaaggggacaccaactccataaaatggaatctttgatttaatcgtttgggtaggagagcttcagatagttaa |
3868451 |
T |
|
| Q |
100 |
---gatcgagtaagttaaaatgcaggccaattattaatgaagattaattcctgtagttcaatttgtggaagaatccttatatataaatnnnnnnnnnnnn |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3868452 |
ttagatcgagtaagttaaaatgcaggccaattattaatgaagattaattcctgtagttcaatttgtggaagaatccttatatataaatacacacacaccc |
3868551 |
T |
|
| Q |
197 |
nnnnnnnntttaacataaggaacaaaacatcgtttacatttacattaagcaaacatgacttcttctccttgtaaattctacaccatctttctttttctta |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3868552 |
tcacacactttaacataaggaacaaaacatcgtttacatttacattaagcaaacatgacttcctctccttgtaaattctacaccatctttctttttctta |
3868651 |
T |
|
| Q |
297 |
gctttgcactcctccttttctccacattgggtaagactatatgattaagct |
347 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3868652 |
gctttgcactcatccttttctccacattgggtaagactatatgattaagct |
3868702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 347
Target Start/End: Original strand, 3826327 - 3826660
Alignment:
| Q |
5 |
aatctggccaagtttgtaatt-aacaaaggggccaccaactccataaaattgaatctttgatttaatcgtttgagtaggagagctgcaaatagttagatc |
103 |
Q |
| |
|
||||| |||||||||| |||| || ||| |||| ||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
3826327 |
aatcttgccaagtttgcaattcaagaaattggccgccaacaccataaaatggaatctttgatttaatcgtttgaggaggag--ctgcaaatagttagatc |
3826424 |
T |
|
| Q |
104 |
gagtaagttaaaatgcaggccaattattaatgaagattaattcctgtagttcaatttgtggaagaatccttatatataaatnnnnnnnnnnnnnnnnnnn |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | || |
|
|
| T |
3826425 |
gagtaagttaaaatgcaagccaattattaatgaagattaattcctgctgttcaatttgtggaagaatctttatatacatat----------atacacaca |
3826514 |
T |
|
| Q |
204 |
ntttaacataaggaacaaaacatcgtttacatttacatt--aagcaaacatgacttcttctccttgtaaattctacaccatctttctttttcttagcttt |
301 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||||||||| | || ||||||||| ||| || ||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
3826515 |
cttgaacataaggaacaacacatcatttacatttacatttatattaagcatgacttcctctgctcgtaaattctacgccatctttctatttctgagcttt |
3826614 |
T |
|
| Q |
302 |
gcactcctccttttctccacattgggtaagactatatgattaagct |
347 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
3826615 |
gcactcctccttttctccacattgggtacgattttatgattaagct |
3826660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 3863998 - 3864175
Alignment:
| Q |
1 |
atggaatctggccaagtttgtaatt-aacaaaggggccaccaactccataaaattgaatctttgatttaatcgtttgagtaggagagctgcaaatagtta |
99 |
Q |
| |
|
||||||||| |||| ||||| |||| || |||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
3863998 |
atggaatcttgccatgtttgcaattcaagaaagtggccgccaactccataaaatggaatctttgatttaatcgtttgaggaggag--ctgcaaatagtta |
3864095 |
T |
|
| Q |
100 |
gatcgagtaagttaaaatgcaggccaattattaatgaagattaattcctgtagttcaatttgtggaagaatccttatata |
179 |
Q |
| |
|
|| || ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3864096 |
gaccgtgtaagttaaaatgcaagccaattattaatgaagattaattcctgctgttcaatttgtggaagaatccttatata |
3864175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 3821891 - 3822064
Alignment:
| Q |
5 |
aatctggccaagtttgtaatt-aacaaaggggccaccaactccataaaattgaatctttgatttaatcgtttgagtaggagagctgcaaatagttagatc |
103 |
Q |
| |
|
||||| |||||||||| |||| || |||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
3821891 |
aatcttgccaagtttgcaattcaagaaagtggccgccaactccataaaatggaatctttgatttaatcgtttgaggaggag--ctgcaaatagttagatc |
3821988 |
T |
|
| Q |
104 |
gagtaagttaaaatgcaggccaattattaatgaagattaattcctgtagttcaatttgtggaagaatccttatata |
179 |
Q |
| |
|
||||||||||| ||||| || |||| ||||| |||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
3821989 |
gagtaagttaagatgcaagcaaatttttaataaagattaattcctgctgttcaatttgtggaagaatccttgtata |
3822064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 210 - 347
Target Start/End: Original strand, 3864198 - 3864341
Alignment:
| Q |
210 |
cataaggaacaaaacatcgtttacattta------cattaagcaaacatgacttcttctccttgtaaattctacaccatctttctttttcttagctttgc |
303 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||| ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
3864198 |
cataaggaacaaaacatcatttacatttacgtttacattaagcaagcatgacttcctctcctagtaaattctacgccatctttctttttctgagctttgc |
3864297 |
T |
|
| Q |
304 |
actcctccttttctccacattgggtaagactatatgattaagct |
347 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
3864298 |
actcctccttttctccacattgggtatgattttatgattaagct |
3864341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 229 - 347
Target Start/End: Original strand, 3822089 - 3822207
Alignment:
| Q |
229 |
tttacatttacattaagcaaacatgacttcttctccttgtaaattctacaccatctttctttttcttagctttgcactcctccttttctccacattgggt |
328 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
3822089 |
tttacgtttacattaagcaagcatgacttcctctgctcgtaaattctacaccatctttctttttctgagctttgcactcctccttttctcaacattgggt |
3822188 |
T |
|
| Q |
329 |
aagactatatgattaagct |
347 |
Q |
| |
|
| || | |||||||||||| |
|
|
| T |
3822189 |
acgattttatgattaagct |
3822207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 3862261 - 3862437
Alignment:
| Q |
1 |
atggaatctggccaagtttgtaatt-aacaaaggggccaccaactccataaaattgaatctttgatttaatcgtttgagtaggagagctgcaaatagtta |
99 |
Q |
| |
|
||||||||| |||||| || |||| || |||| |||| ||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
3862261 |
atggaatctttccaagtctgcaattcaagaaagtggccgccaactccataaaatggaatctttgatttaatcgtttgag-----gacctgcaaaaagtta |
3862355 |
T |
|
| Q |
100 |
gatcgagtaagttaaaatgcaggccaattattaatgaagattaattcctgtagttcaatttgtggaagaatccttatatata |
181 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3862356 |
gacgaagtaagttaaaatgcaagccaattattaatgaagattaatcccttctgttcaattcgtggaagaatccttatatata |
3862437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 3859868 - 3859990
Alignment:
| Q |
220 |
aaaacatcgtttacatttacattaagcaaacatgacttcttctccttgtaaattctacaccatctttctttttcttagctttgcactcctccttttctcc |
319 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||| |||| ||| || ||||||| |||| |||||||| ||||| ||| ||||||| ||||| |||| | |
|
|
| T |
3859868 |
aaaacatcatttccatttacattaagcaagcatggcttcatctactcttaaattcaacactatctttctgtttctcagccttgcacttctcctgttcttc |
3859967 |
T |
|
| Q |
320 |
acattgggtaagactatatgatt |
342 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
3859968 |
acattgggtatgactatatgatt |
3859990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 3876483 - 3876590
Alignment:
| Q |
233 |
catttacattaagcaaacatgacttcttctccttgtaaattctacaccatctttctttttcttagctttgcactcctccttttctccacattgggtaaga |
332 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| | |||||||||| |||||||||| ||||| ||| ||||| |||||||| ||||||| ||||| || |
|
|
| T |
3876483 |
catttacattaagcaagcatggcttcctctacgcctaaattctacgccatctttctgtttctcagcattgca---ctccttttttccacatggggtacga |
3876579 |
T |
|
| Q |
333 |
ctatatgatta |
343 |
Q |
| |
|
||||||||||| |
|
|
| T |
3876580 |
ctatatgatta |
3876590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 3888004 - 3888064
Alignment:
| Q |
268 |
taaattctacaccatctttctttttcttagctttgcactcctccttttctccacattgggt |
328 |
Q |
| |
|
||||||||||||||||||||| || || |||||||| |||||||||||||||||| ||||| |
|
|
| T |
3888004 |
taaattctacaccatctttctgttcctcagctttgctctcctccttttctccacaatgggt |
3888064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 3903544 - 3903640
Alignment:
| Q |
251 |
atgacttcttctccttgtaaattctacaccatctttctttttcttagctttgcactcctccttttctccacattgggtaagactatatgattaagct |
347 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||||| || || ||| |||| ||||||||||| ||||||| ||||| | ||||| |||||||| |
|
|
| T |
3903544 |
atgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagct |
3903640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 3906379 - 3906458
Alignment:
| Q |
268 |
taaattctacaccatctttctttttcttagctttgcactcctccttttctccacattgggtaagactatatgattaagct |
347 |
Q |
| |
|
||||||||||| ||||||||| || || ||| |||| ||||||||||| ||||||| ||||| | |||||| |||||||| |
|
|
| T |
3906379 |
taaattctacatcatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtctatataattaagct |
3906458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 3818419 - 3818529
Alignment:
| Q |
233 |
catttacattaagcaaacatgacttcttctccttgtaaattctacaccatctttctttttcttagctttgcactcctccttttctccacattgggtaaga |
332 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| || ||||| |||||| ||||||| ||| | | | ||||||| |||| || ||||||||||||| || |
|
|
| T |
3818419 |
catttacattaagcaagcatggcttcctctgctcttaaatactacactttctttctgtttttcatccttgcacttatcctgttatccacattgggtacga |
3818518 |
T |
|
| Q |
333 |
ctatatgatta |
343 |
Q |
| |
|
||||||||||| |
|
|
| T |
3818519 |
ctatatgatta |
3818529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 3862564 - 3862603
Alignment:
| Q |
308 |
ctccttttctccacattgggtaagactatatgattaagct |
347 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3862564 |
ctccttttctccacattgggtacgactacatgattaagct |
3862603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 3820638 - 3820683
Alignment:
| Q |
99 |
agatcgagtaagttaaaatgcaggccaattattaatgaagattaatt |
145 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
3820638 |
agatcgagtaagttaaaa-gcaagccaattgttaatgaagattaatt |
3820683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 3812746 - 3812698
Alignment:
| Q |
244 |
agcaaacatgacttcttctccttgtaaattctacaccatctttcttttt |
292 |
Q |
| |
|
||||||||||||||| ||| || ||||||| |||||||||||| ||||| |
|
|
| T |
3812746 |
agcaaacatgacttcctctgctagtaaattttacaccatctttgttttt |
3812698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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