View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11504_low_6 (Length: 362)
Name: NF11504_low_6
Description: NF11504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11504_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 42153614 - 42153794
Alignment:
| Q |
1 |
aagaagactaacgagaaggagggtaagtaggagcattttgaaaccagagttcagcttgaagagcttcagaagaagattcaggtttagtgaaatcaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42153614 |
aagaagactaacgagaaggagggtaagtaggagcattttgaaaccagagttcagcttgaagagcttcggaagaagattcaggtttagtgaaatcaaagaa |
42153713 |
T |
|
| Q |
101 |
acgtgctgcgtcgaattcgtattcaagatcaatttcatgagctatgaaaacgtgtggtatttcagtttcttcgtcttcttc |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42153714 |
acgtgctgcgtcgaattcgtattcaagatcaatttcatgagctatgaaaacgtgtggtatttcggtttcttcgtcttcttc |
42153794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 220 - 344
Target Start/End: Original strand, 42153821 - 42153945
Alignment:
| Q |
220 |
atgattcgtaacgagctaactctatttatctatctgaatgttaatactgtgtcagtgaagtgggtgaagtcataaaccggtttgtgttgtggagccccga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42153821 |
atgattcgtaacgagctaactctatttatctatctgaatgttaatactgtgtcagtgaagtgggtgaagtcataaaccggtttgtgttgtggagccccga |
42153920 |
T |
|
| Q |
320 |
atctgacccgaataattgaaatcaa |
344 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42153921 |
atctgacccgaataattgaaatcaa |
42153945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University