View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11505_low_1 (Length: 894)

Name: NF11505_low_1
Description: NF11505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11505_low_1
NF11505_low_1
[»] chr1 (2 HSPs)
chr1 (1-894)||(6316522-6317418)
chr1 (805-852)||(6297523-6297570)


Alignment Details
Target: chr1 (Bit Score: 846; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 846; E-Value: 0
Query Start/End: Original strand, 1 - 894
Target Start/End: Original strand, 6316522 - 6317418
Alignment:
Q  1 ttatctacattcagatctctgctggaaactaaagattcaaagagtaagagtatggatatatctatcaatcatcacccaccaaatcaaacagagatatcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6316522 ttatctacattcagatctctgctggaaactaaagattcaaagagtaagagtatggatatatctatcaatcatcacccaccaaatcaagcagagatatcat 6316621  T
Q  101 atcagactttataaataggaaactaaagatcaatgcaaatagagaaaaataaccatattcactgccgaaaactatatcataacctcagtctgcatcatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316622 atcagactttataaataggaaactaaagatcaatgcaaatagagaaaaataaccatattcactgccgaaaactatatcataacctcagtctgcatcatat 6316721  T
Q  201 tgaaaccatattaaccccagacacgtatcggt--tgtattgtgtcctggtctattttaatctaaaacatgaaagtagtaacggaattatataagtaagtg 298  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316722 tgaaaccatattaaccccagacacgtatcggtattgtattgtgtcttggtctattttaatctaaaacatgaaagtagtaacggaattatataagtaagtg 6316821  T
Q  299 aaaaagaagttttggttcttagtgtagtcagttcaaaaactacgagaaaaaccatagtggccttcatttttatgaaatgctatatgtatcatattctatc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316822 aaaaagaagttttggttcttagtgtagtcagttcaaaaactacgagaaaaaccatagtggccttcatttttatgaaatgctatatgtatcatattctatc 6316921  T
Q  399 atcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataaagaaatggaaaaagtcagaacagcacctaacaacccttaacatcttt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316922 atcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataaagaaatggaaaaagtcagaacagcacctaacaacccttaacatcttt 6317021  T
Q  499 gatgccttaaggcttcaaagttacgactatatcatagaaaggtttcaaagtttgtctgtctttttagcttcagagcaacaagagttatctcttaaagaaa 598  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6317022 gatgccttaaggcttcaaagttacgactatatcatagaaaggctgcaaagtttgtctgtctttttagcttcagagcaacaagagttatctcttaaagaaa 6317121  T
Q  599 tgttattctacaagagcatttaaataaagaataaa-cttgagttccacaatatctaagtctcagtaagagtattattattcattaatcattaccttgctc 697  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6317122 tgttattctacaagagcatttaaataaagaataaagcttgagttccacaatatctaagtctcagtaagagtattattattcattaatcattaccttgctc 6317221  T
Q  698 gaatatacttggaaaatcagtcaaagtaaaatgtaaagcttgagtttcacattaccctgctagtcaaagtaaaagcagtcattgtataaagaataaaaaa 797  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6317222 gaatatacttggaaaatcagtcaaagtaaaatgtaaagcttgagtttcacattaccctgctagtcaaagtaaaagcagtcattgtataaagaataaaaaa 6317321  T
Q  798 gtcacataccagctcagttcagactacttcatcagaagtgtcctttgctatagaagtctgttaaagcaagtaatagcaaattaccttttacttcttt 894  Q
    | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6317322 gccgcataccagctcagttcagactacttcatcagaagtgtcctttactatagaagtctgttaaagcaagtaatagcaaattacattttacttcttt 6317418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 805 - 852
Target Start/End: Original strand, 6297523 - 6297570
Alignment:
Q  805 accagctcagttcagactacttcatcagaagtgtcctttgctatagaa 852  Q
    |||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  6297523 accagctctgttcagactacttcatcagaagtgtcctttactaaagaa 6297570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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