View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11505_low_4 (Length: 235)
Name: NF11505_low_4
Description: NF11505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11505_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 35834760 - 35834982
Alignment:
| Q |
13 |
aatacaatgtctaaaatcataggaatataacctctatagcaccaacacatcttataaaatgcatatctagtgtctgcactatctgacactaacaaatgtg |
112 |
Q |
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| T |
35834760 |
aatacaatgtctaaaatcataggaatataacctctatagcaccaacacatcttataaaatgcatatctagtgtctgcactatctgacactaacaaatgtg |
35834859 |
T |
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| Q |
113 |
attacattcaattaaataattttctcagtagcattactcatattagatcaacacattacaaaaaagagataaaataagaaagttaccgatggtttcacat |
212 |
Q |
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| T |
35834860 |
attacattcaattaaataattttctcaataccatttctcatattaaatcaacacattacaaaaaagagataaaataagaaagttaccgatggtttcacat |
35834959 |
T |
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| Q |
213 |
aaacaccaaatccaccagtaagc |
235 |
Q |
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| T |
35834960 |
aaacaccaaatccaccagtaagc |
35834982 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 6252495 - 6252536
Alignment:
| Q |
98 |
acactaacaaatgtgattacattcaattaaataattttctca |
139 |
Q |
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| T |
6252495 |
acactaacaaatgtgattacatttaattaaattattttctca |
6252536 |
T |
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