View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11506_low_2 (Length: 488)
Name: NF11506_low_2
Description: NF11506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11506_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 472
Target Start/End: Original strand, 41286453 - 41286914
Alignment:
| Q |
11 |
cagagaatattacactacgagctatctcgggttcgatggaatgaaggatccatgttaacaccagatcattgcaacgtttacataatgggagttttgggtc |
110 |
Q |
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| T |
41286453 |
cagagaagattacactacgagctatgtcgggttcgatggaatgaaggatccatgttagcaccagatcattgcaacgtttccacaatgggagttttgggtc |
41286552 |
T |
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| Q |
111 |
atcagccgaccacgctttcactgttccatggatcagaccgagtttgtttttggcactaagactgaggagcattaagcgactccattcgtcttagttacgt |
210 |
Q |
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| T |
41286553 |
gtcagccgacggcgctttcaccgttccatcgatcagaccgagtttgtttttggcgctgaggctgaggagcattgatcgactccattcgccgtagttacct |
41286652 |
T |
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| Q |
211 |
ccattcagaggttggttaaccattgatatcccttgagtatcagaatggtgtaagagcaaagaatcagacaatgatgtttccatcgcctttgcaccttgca |
310 |
Q |
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| T |
41286653 |
ccattcagaggttggttaaccagtgatatccctggtgtgtcagaatggtgtaagagcaaaggatcgggcaatgatgtttccatcgcctttgcaccttgca |
41286752 |
T |
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| Q |
311 |
gtgttggtttttcctttgataggtctcaattttcaaccctagcagttgttttttcacccatttggctctgattttgttgcggaagggaattaggttgggc |
410 |
Q |
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| T |
41286753 |
atgttggtttttcttttgattgctctggattttcaaccgtaacagtggttttgtcagccatttggctctgattttgttgcggaaggggattaggttgggc |
41286852 |
T |
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| Q |
411 |
aggcacaagaatcgtgctctggtaccatatacaaatgtatgatagaggataaattgtattat |
472 |
Q |
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| T |
41286853 |
aggcacaagaatcgtgctctggtaccatatagaaatgtatgattggggataaattgtattat |
41286914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 115 - 431
Target Start/End: Original strand, 19523985 - 19524301
Alignment:
| Q |
115 |
gccgaccacgctttcactgttccatggatcagaccgagtttgtttttggcactaagactgaggagcattaagcgactccattcgtcttagttacgtccat |
214 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||| |
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| T |
19523985 |
gccgacgacgctttcactgttccatcgatcagaccgagtttgtttttggcgctaagactgaggagcattaagcgactccattagccgtagttacgtccat |
19524084 |
T |
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| Q |
215 |
tcagaggttggttaaccattgatatcccttgagtatcagaatggtgtaagagcaaagaatcagacaatgatgtttccatcgcctttgcaccttgcagtgt |
314 |
Q |
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| T |
19524085 |
tcagaggttggttaaccaatgatatcccttgtgtgtcataatggtgtaagagcaaaggatcaggcaatgatgtttccatcgcctttgcaccttgcagtgt |
19524184 |
T |
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| Q |
315 |
tggtttttcctttgataggtctcaattttcaaccctagcagttgttttttcacccatttggctctgattttgttgcggaagggaattaggttgggcaggc |
414 |
Q |
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| T |
19524185 |
tggtttttcttttgataggtctgaattttcaaccctagcagttgttttgtcagccatttggctctgattttgttgcggaaggtaattaggttgggcaggc |
19524284 |
T |
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| Q |
415 |
acaagaatcgtgctctg |
431 |
Q |
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| T |
19524285 |
acaagaatcgtgctctg |
19524301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 19523915 - 19523986
Alignment:
| Q |
11 |
cagagaatattacactacgagctatctcgggttcgatggaatgaaggatccatgttaacaccagatcattgc |
82 |
Q |
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| T |
19523915 |
cagagaatattacactacgagctatgtcgggttcgatggaatgaagaatccatgttaacaccagatccttgc |
19523986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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