View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11506_low_4 (Length: 285)
Name: NF11506_low_4
Description: NF11506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11506_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 50446175 - 50445902
Alignment:
| Q |
12 |
agagaaagcagttcagaagaagatccaagagttagaagaaggacatgcttacatgaaacaagaaatgtcaaagcttaaacttagtgatggaagagaacaa |
111 |
Q |
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| T |
50446175 |
agagaaagcagttcagaagaagatccaagagttagaagaaggacatgcttacatgaaacaagaaatgtcaaagcttaaacttagtgatggaagagaacaa |
50446076 |
T |
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| Q |
112 |
caacaacatcatcatcgtcaaaggtctcactctgtgtcacctcaacgttctagattaggttcttggaacaaaggttcttgttctttcaaacactcttcac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50446075 |
caacaacatcatcatcgtcaaaggtctcactctgtgtcacctcaacgttctagattaggttcttggaacaaaggttcttgttctttcaaacactcttcac |
50445976 |
T |
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| Q |
212 |
ctctcagaaaggaaactcatgctcacgcgcttgttaatttcactgagaaacattatctcaatattttgcattct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50445975 |
ctctcagaaaggaaactcatgctcacgcgcttgttaatttcactgagaaacattatctcaatattttgcattct |
50445902 |
T |
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