View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11506_low_5 (Length: 271)
Name: NF11506_low_5
Description: NF11506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11506_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 30071069 - 30070816
Alignment:
| Q |
1 |
aataattgttccatcaaaaatcaaactcgaattctttcctcatttgataaagctcattagccacatctcgaccacttgattatttatattatattttaaa |
100 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
30071069 |
aataattgttccatcagaaatgaaactcgaattctttcctcatttgataaagctcattagccgcatctcaaccacttgattatttatattatattttaaa |
30070970 |
T |
|
| Q |
101 |
ttaaccagtaggagatggtgaaatttcaaatgactatatactactttacattttaagatattcatgccacgtcatagcagcatgtcagattctcttctat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |
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| T |
30070969 |
ttaaccagtaggagatggtgaaatttcaaatgactatatactactttacattttaagatattcatgccaagtcattgcagcatatcagattctcttctat |
30070870 |
T |
|
| Q |
201 |
tcacatttacaaattctagactaaagtttagtcggcaacaagttagtatggttg |
254 |
Q |
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|||||||||| |||| ||| | |||||||| ||||||||| |||| |||||||| |
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| T |
30070869 |
tcacatttactaattttaggccaaagtttaatcggcaacatgttaatatggttg |
30070816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 30052413 - 30052196
Alignment:
| Q |
33 |
tctttcctcatttgataaagctcattagccacatctcgaccacttgattatttatattatattttaaattaaccagtaggagatggtgaaatttcaaatg |
132 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30052413 |
tctttcctcatttaataaagctcattagccacatctcaaccacttgattatttatattatattttaaattaaccggtaggagatggtgaaatttcaaatg |
30052314 |
T |
|
| Q |
133 |
actatatactactttacattttaagatattcatgccacgtcatagcagcatgtcagattctcttctattcacatttacaaattctagactaaagtttagt |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
30052313 |
actatatactactttacattttaagatattcatgccacgtcattgcagcatgtcagattctcttctattcacatttacaaattataggctaaagtttagt |
30052214 |
T |
|
| Q |
233 |
cggcaacaagttagtatg |
250 |
Q |
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||||||||||||| |||| |
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| T |
30052213 |
cggcaacaagttaatatg |
30052196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 30062081 - 30061969
Alignment:
| Q |
77 |
tgattatttatattatattttaaattaaccagtaggagatggtgaaatttcaaatgactatatactactttacattttaagatattcatgccacgtcata |
176 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| || ||||||| ||| |||||||||||| ||| |||||| | |
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| T |
30062081 |
tgattatttatactatattttaaattaactagtaggagatggtgaattttcaaatgattagatactacattagattttaagatatccataccacgttttt |
30061982 |
T |
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| Q |
177 |
gcagcatgtcaga |
189 |
Q |
| |
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|||||||||||| |
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| T |
30061981 |
acagcatgtcaga |
30061969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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