View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11506_low_8 (Length: 247)
Name: NF11506_low_8
Description: NF11506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11506_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 36525940 - 36526173
Alignment:
| Q |
1 |
ttatttagggactaattatatttacataatttagacttcaaattgaagtgtaagtgatagtttacggactacatcgatggtttattcttcgttttcccca |
100 |
Q |
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| T |
36525940 |
ttatttagggactaattatatttacataatttagacttcaaattgaagtgtaggtgatagtttacagactacatcgatggtttattcttcgttttccctg |
36526039 |
T |
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| Q |
101 |
cgatgctattgttactatctatattactaccgtatagagagagcaatataaaaatactggataacataaaacagatagccccccaaagtggcatatgcat |
200 |
Q |
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| T |
36526040 |
caatgctattgttactatctatattactatcgtatagagagagcaatataaaaatactggaaaacataaaacagatagccccccaaagtggcatatgcat |
36526139 |
T |
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| Q |
201 |
tgcgacgttaatgaatgtgacatgagaatgatag |
234 |
Q |
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| T |
36526140 |
tgcgacgttagtgaatgtgacatgagaatgatag |
36526173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 36533354 - 36533409
Alignment:
| Q |
166 |
ataaaacagatagccccccaaagtggcatatgcattgcgacgttaatgaatgtgac |
221 |
Q |
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| T |
36533354 |
ataaaacagataggcccccgaagtggcatctacattgcaacgttagtgaatgtgac |
36533409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 36553513 - 36553590
Alignment:
| Q |
152 |
aaatactggataacataaaacagatagccccccaaagtggcatatgcattgcgacgttaatgaatgtgacatgagaat |
229 |
Q |
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| T |
36553513 |
aaatattggacaatataaaacaaataggcccccaaagtggcatttgcattgtgacattagtggatatgacttgagaat |
36553590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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