View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11507_high_4 (Length: 363)
Name: NF11507_high_4
Description: NF11507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11507_high_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 48922513 - 48922863
Alignment:
| Q |
13 |
tgaattcgatcctttcatgaagcgtcatacaaactacaaagcaggagctttgtttcatgtaacaaaaatcttgagatagaatcctacaagtttatcagag |
112 |
Q |
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| T |
48922513 |
tgaattcgatccttccatgaagcgtcatacaaactacaaagcaggagctttgtttcatgtaacaaaaatcttgagatagaatcctacaagtttatcagag |
48922612 |
T |
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| Q |
113 |
ttgtataaggaaagagataataaatgcaaaagggatttctagataagcatttcatatataatggacactaattaacgaagtttacattgataatgattag |
212 |
Q |
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| T |
48922613 |
ttgtaaaaggaaagagataataaatgcagaagggatttctagataagcatttcatatataatggacactaattaacgaagtttacattgataatgattag |
48922712 |
T |
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| Q |
213 |
attattggtgaacaaatatatacatgttcaagtgctaaactaagatgagttaacaacatgtgctgcagttaatctgcaacttcttattttttgtatatgc |
312 |
Q |
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| T |
48922713 |
attattggtgaacaaatatatacatgttcaagtgctaaactaagatgagttaacaacatgtgctgcagttaatctgcaacttcttattttttgtatatgc |
48922812 |
T |
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| Q |
313 |
tgcataaagagcaacagataaatagaagtataaaattagtaatgttatgtc |
363 |
Q |
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| T |
48922813 |
tgcataaagagcaacagataaatagaagtataaaattagtaatgttatgtc |
48922863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 48876422 - 48876383
Alignment:
| Q |
226 |
aaatatatacatgttcaagtgctaaactaagatgagttaa |
265 |
Q |
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| T |
48876422 |
aaatacatgcatgttcaagtgctaaactaagatgagttaa |
48876383 |
T |
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