View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11507_high_7 (Length: 274)
Name: NF11507_high_7
Description: NF11507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11507_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 39740496 - 39740355
Alignment:
| Q |
109 |
taagtcacgcacttgttacaagttacaacggatatatacgtacactcttcacatgtgaaatgaagtgaagcaatcaaaatcaaatatattgaattaaatc |
208 |
Q |
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| T |
39740496 |
taagtcacgcacttgttacaagttacaacggatatatacgtacactcttcacatgtgaaatgaagtgaagcaatcaaaatcaaatatattgaattaaatc |
39740397 |
T |
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| Q |
209 |
aacaaagttagat-agtgccatcgttac-tccactttctcca |
248 |
Q |
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| T |
39740396 |
aacaaagttagataagtgccatcgttacttccactttctcca |
39740355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39740604 - 39740560
Alignment:
| Q |
1 |
ttgggaacgtgattatgtgacataacacctgtactattgtcgtgt |
45 |
Q |
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| T |
39740604 |
ttgggaacgtgattatgtgacacaacgcctgtaccattgtcgtgt |
39740560 |
T |
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