View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11507_high_9 (Length: 240)
Name: NF11507_high_9
Description: NF11507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11507_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2836421 - 2836208
Alignment:
| Q |
1 |
ccataaaaaatctttacaggaaaagtttttactaattaattctagagattgtaatcattcatacaagtaaaagtgtagggaacaaatgtttaaaattgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2836421 |
ccataaaaaatctttacaggaaaagtttgtactaattaattctagagattgtaatcattcatacaagtaaaagtgtagggaacaaatgtttaaaattgtt |
2836322 |
T |
|
| Q |
101 |
caatcgcaaaggtcatatatgagaaactaattgaaccagttttaaacatttcagtttctcttctctgacctgtatgatcgaacaatttagaatggatatt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2836321 |
caatcgcaaaggtc-----------actaattgaaccagttttaaacatttcagtttctcttctctgacctgtatgatcgaacaatttagaatggatatt |
2836233 |
T |
|
| Q |
201 |
tgtgtatgtttagaatgaatctttg |
225 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2836232 |
ggtgtatgtttagaatgaatctttg |
2836208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University