View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11507_low_1 (Length: 629)
Name: NF11507_low_1
Description: NF11507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11507_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 346 - 614
Target Start/End: Complemental strand, 4075058 - 4074795
Alignment:
| Q |
346 |
tgacacgtgtcaaataacgaggtctatttgcattgcaacttgcaacaccattaccgatcccaacctgtcacaatcaatctgacaaacgacgtacactttt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4075058 |
tgacacgtgtcaaataacgaggtctatttgca-----acttgcaacaccattaccgatcccaaccagtcacaatcaatctgacaaacgacgtacactttt |
4074964 |
T |
|
| Q |
446 |
caccacattcatgttctgccacgtcattctatgcaacttgttgattattatcaaacacgtgtcacatacctaattagccacaatactaaaataaaatgtg |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4074963 |
caccacattcatgttctgccacgtcattctatgcaacttgttcatttttatcaaacacgtgtcacatacctaattagccacagtactaaaataaaatgtg |
4074864 |
T |
|
| Q |
546 |
catgcaacttggcctttgatgtgggacccattagttgatcctctaataatcttcttctgatcttctgtg |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4074863 |
catgcaacttggcctttgatgtgggacccattagttgatcctctaataatcttcttctgatcttctgtg |
4074795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 22 - 280
Target Start/End: Complemental strand, 4075394 - 4075133
Alignment:
| Q |
22 |
agtgatcataactcacatattttaaatgtaaagaaattagatgtttagggtttgaacctcaatctctgcatataacatgcaatatttcttgagttaagtt |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
4075394 |
agtgatcaaaactcacatattttaaatgtaaagaaattag-tgtttagggtttgaacctcaatctctgcatataatatacaatatttcttgagttaagtt |
4075296 |
T |
|
| Q |
122 |
aaatgattaatcaaattgtttatttatttg-tttaaaaatgaaaacaaaactcacttgaattgacctgctggtatttacttgagatctata---gtgttt |
217 |
Q |
| |
|
||||| ||||||||||||||| ||||||| || |||||| |||||||||| ||||||||||| ||| ||| ||| |||||||||||| | ||||| |
|
|
| T |
4075295 |
taatgaataatcaaattgtttaattatttgcttaaaaaataaaaacaaaacccacttgaattggcctaatggcattgacttgagatctagagccgtgttc |
4075196 |
T |
|
| Q |
218 |
cttttcaacgtatcatgtttgattctctgaagtgttaatttgaatggacaaatttcacttctt |
280 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||| ||| ||||||||||||||| |
|
|
| T |
4075195 |
cttttcaaaatatcatgtttgattctctctaatgttaatttgagtgggcaaatttcacttctt |
4075133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 27464147 - 27464175
Alignment:
| Q |
79 |
ctcaatctctgcatataacatgcaatatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27464147 |
ctcaatctctgcatataacatgcaatatt |
27464175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University