View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11507_low_15 (Length: 226)
Name: NF11507_low_15
Description: NF11507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11507_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 2752836 - 2752983
Alignment:
| Q |
1 |
agtgtccaagagaggatcgtatcactcattaaataattgtgaagtgtcccttcgcgaaattaagcattttccatttgataacatgtttttattaagcatt |
100 |
Q |
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| T |
2752836 |
agtgtccaagagagggtcgtatcattcattaaataattgtgaagtgtcccttcgcgaaattaagcattttccatttgataacatgtttttattaagcatt |
2752935 |
T |
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| Q |
101 |
tcatgatataactaatactctctttgttcataatctttggtactttaa |
148 |
Q |
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| T |
2752936 |
tcatgatataactaatactctctttgttcataatctttggtactttaa |
2752983 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 2753506 - 2753560
Alignment:
| Q |
172 |
tatttgaagatgatatatgatatatcagtgatatatgctcgacgtgtatatttcg |
226 |
Q |
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| T |
2753506 |
tatttgaagatgatatatgatatatcagtgatatatgctcgacgtgtatatttcg |
2753560 |
T |
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