View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11507_low_2 (Length: 524)
Name: NF11507_low_2
Description: NF11507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11507_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 48923084 - 48923396
Alignment:
| Q |
1 |
tttaaatccatctttcaccaaaaaacaaacaaaatccatatcagtaaattaaagttactcctgatgtcagtaaataaaagggaatatatcatactaatgt |
100 |
Q |
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| T |
48923084 |
tttaaatccatctttcaccaaaaaacaaacaaaatccatatcagtaaattaaagttactcctgatgtcagtaaataaaggggaatatatcatactaatgt |
48923183 |
T |
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| Q |
101 |
agagggaggcttcgttctgcaaacatgagaaggaagaacaattttgatgtgactttacataggaactaggtatcgataattagcaatgtccaaaacttct |
200 |
Q |
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| T |
48923184 |
agagggaggcttcgttctgcaaacatgagaaggaagaacaattttgatgtgactttacataggaactaggtatcgataattagcaatgtccaaagcttct |
48923283 |
T |
|
| Q |
201 |
g-----------catacatgtttgtgcttgctttgagatatataagctataagctacaatgattcgaaacgtatgaaagtggaaggaaatattaagcatt |
289 |
Q |
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| T |
48923284 |
gctaggtagaaacatacatgtttgtgcttgctttgagatatataagctataagctacaatgatttgaaacgtatgaaagtggaaggaaatattaagcatt |
48923383 |
T |
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| Q |
290 |
tcaatgagtgtga |
302 |
Q |
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| T |
48923384 |
tcaatgagtgtga |
48923396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 334 - 506
Target Start/End: Original strand, 48923394 - 48923566
Alignment:
| Q |
334 |
tgattattgagcaacttgaaggagcgttgagggagtgagtgagtggtgggtgtgtatgtttctgactaaaacccacatcggttagtgcttaaatcaaact |
433 |
Q |
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| T |
48923394 |
tgattattgagcaacttgaaggagcgttgagggagtgagtgagtggtgggtgtgtatgtttctgactaaaacccacatcggttagtgcttaaatcaaact |
48923493 |
T |
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| Q |
434 |
agaccgctcaagctataaatataaatggacttacccatttcaaatcacagagttgtgggtcatgtgatcaact |
506 |
Q |
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| T |
48923494 |
agaccgctcaagctataaatataaatggacttactcatttcaaatcacagagttgtgggtcatgtgatcaact |
48923566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 48922988 - 48923034
Alignment:
| Q |
2 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatatcagtaaa |
48 |
Q |
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| T |
48922988 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatgtcagtaaa |
48923034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 48878268 - 48878206
Alignment:
| Q |
83 |
aatatatcatactaatgtagagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
145 |
Q |
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| T |
48878268 |
aatatatcatgctaaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaatttt |
48878206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 48875688 - 48875605
Alignment:
| Q |
247 |
aatgattcgaaacgtatgaaagtggaaggaaatattaagcatttcaatgagtgtgagtggatcagggaagattgtgagataggc |
330 |
Q |
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| T |
48875688 |
aatgtttcgaagcatatgaaagtggaagaagataccaagcatttcaacgagtgtgcgtggatcagggtgcattgtgaaataggc |
48875605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 48873188 - 48873144
Alignment:
| Q |
101 |
agagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
145 |
Q |
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| T |
48873188 |
agagggaggctttgttatgcaaacatgagaaagaagaagaatttt |
48873144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 9573919 - 9573867
Alignment:
| Q |
261 |
tatgaaagtggaaggaaatattaagcatttcaatgagtgtgagtggatcaggga |
314 |
Q |
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| T |
9573919 |
tatgaaagtggaagaaaatattcagcatttcaatg-gggtgagtggatcaggga |
9573867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 9583006 - 9582959
Alignment:
| Q |
249 |
tgattcgaaacgtatgaaagtggaaggaaatattaagcatttcaatga |
296 |
Q |
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| T |
9583006 |
tgattcgaagcttatgaaagtggaagaaaatattcagcatttcaatga |
9582959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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