View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11507_low_3 (Length: 484)

Name: NF11507_low_3
Description: NF11507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11507_low_3
NF11507_low_3
[»] chr7 (4 HSPs)
chr7 (19-249)||(32196197-32196427)
chr7 (313-467)||(32195979-32196133)
chr7 (76-164)||(7500917-7501005)
chr7 (19-75)||(7500842-7500898)
[»] chr1 (1 HSPs)
chr1 (76-188)||(43059679-43059791)
[»] chr8 (2 HSPs)
chr8 (76-164)||(10007314-10007402)
chr8 (19-75)||(10007421-10007477)
[»] chr3 (2 HSPs)
chr3 (76-164)||(47615122-47615210)
chr3 (19-75)||(47615229-47615285)
[»] chr6 (1 HSPs)
chr6 (79-149)||(7315865-7315935)
[»] chr5 (2 HSPs)
chr5 (76-164)||(18486449-18486537)
chr5 (19-75)||(18486556-18486612)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 32196427 - 32196197
Alignment:
Q  19 catcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaatccgaacttcccaccaccgtcaattcttcttccgacgccgttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32196427 catcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaaaccgaacttcccaccaccgtcaattcttcttccgacgccgttc 32196328  T
Q  119 ccaacaacgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgaggagaattccgatgaggagcctgtggtggacaggaagggaaaagg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196327 ccaacaacgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgaggagaattccgatgaggagcctgtggtggacaggaagggaaaagg 32196228  T
Q  219 gattatgcgagatgacaagggaaaagggaaa 249  Q
    |||||||||||||||||||||||||||||||    
T  32196227 gattatgcgagatgacaagggaaaagggaaa 32196197  T

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Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 313 - 467
Target Start/End: Complemental strand, 32196133 - 32195979
Alignment:
Q  313 tctgacggcaatgtttctggtagtgacagtgatttttctgatgatccacttgcggaggttgatttggataacattcttccctctaggactcggcggcgaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196133 tctgacggcaatgtttctggtagtgacagtgatttttctgatgatccacttgcggaggttgatttggataacattcttccctctaggactcggcggcgaa 32196034  T
Q  413 ctgctcagtctggagtgcgcatttctggtggcacgccgaatgctgattagattct 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196033 ctgctcagtctggagtgcgcatttctggtggcacgccgaatgctgattagattct 32195979  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 7500917 - 7501005
Alignment:
Q  76 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 164  Q
    |||||||||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||  |||||||||| || ||||| |||||    
T  7500917 tccgaacttccctccaccgtcaattgctcttccgacgccgatcccaacaacgaacccgaaaatgacactgacgaagacgacgaggacga 7501005  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 7500842 - 7500898
Alignment:
Q  19 catcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 75  Q
    |||||||| |||||||||| ||||||||||||  |  ||||||||||||||||||||    
T  7500842 catcaccttcccaacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 7500898  T

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Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 43059791 - 43059679
Alignment:
Q  76 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgagg 175  Q
    ||||||||| || ||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||    
T  43059791 tccgaacttacctccaccgtcaattgctcttccgacgtcgttcccaacaacgaacccgaaaataacactgacgaagatgacgaagaggacgaagacgagg 43059692  T
Q  176 agaattccgatga 188  Q
    |||||| ||||||    
T  43059691 agaatttcgatga 43059679  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 10007402 - 10007314
Alignment:
Q  76 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 164  Q
    |||||||||||| ||||||||||||  ||||| ||||||| |||||||||||||||||||||  |||| ||||| || ||||| |||||    
T  10007402 tccgaacttccctccaccgtcaattgctcttctgacgccgatcccaacaacgaacccgaaaatgacaccgacgaagacgacgaggacga 10007314  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 10007477 - 10007421
Alignment:
Q  19 catcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 75  Q
    |||||||| |||||||||| ||||||||||||  | || |||| |||||||||||||    
T  10007477 catcaccttcccaacaaaacccccaagctaacaactacaaccatcgtagaccaagaa 10007421  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 47615210 - 47615122
Alignment:
Q  76 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 164  Q
    |||||||||||| ||||||||||||  |||| || ||||| |||||||||||||||||||||  |||||||||| || ||||| |||||    
T  47615210 tccgaacttccctccaccgtcaattgctctttcgtcgccgatcccaacaacgaacccgaaaatgacactgacgaagacgacgaggacga 47615122  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 47615285 - 47615229
Alignment:
Q  19 catcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 75  Q
    |||||||| |||||||||| ||||||||||||  |  ||||||||||||||||||||    
T  47615285 catcaccttcccaacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 47615229  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 7315935 - 7315865
Alignment:
Q  79 gaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacga 149  Q
    ||||||||| ||||||||||||  ||||||||| ||| |||||||||||||||||||||  ||||||||||    
T  7315935 gaacttccctccaccgtcaattgctcttccgacaccgatcccaacaacgaacccgaaaatgacactgacga 7315865  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 18486537 - 18486449
Alignment:
Q  76 tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga 164  Q
    |||||||||||| ||||||||||||  |||| || ||||| |||||||||||||| ||||||  |||||||||| || ||||| |||||    
T  18486537 tccgaacttccctccaccgtcaattgctctttcgtcgccgatcccaacaacgaactcgaaaatgacactgacgaagacgacgaggacga 18486449  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 18486612 - 18486556
Alignment:
Q  19 catcacctccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaa 75  Q
    |||||||| |||||||||| ||||||||||||  |  ||||||||||||||||||||    
T  18486612 catcaccttcccaacaaaacccccaagctaacaactgccaccaccgtagaccaagaa 18486556  T

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