View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11507_low_4 (Length: 381)
Name: NF11507_low_4
Description: NF11507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11507_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 152 - 381
Target Start/End: Complemental strand, 2836654 - 2836421
Alignment:
| Q |
152 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaacccccattttaagtcttttagcaatgaat----tctacaattacaaag |
247 |
Q |
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| T |
2836654 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaatccccattttaagtcttttagcaatgaatgaattctacaattacaaag |
2836555 |
T |
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| Q |
248 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactgttcaatcatatggacgaaaatagttgcttaccttgcacaatctacatg |
347 |
Q |
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| T |
2836554 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactgttcaatcatatggacgaaaatagttgcttaccttgcacaatctacatg |
2836455 |
T |
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| Q |
348 |
gtttgtacacattagaactagccttgtttaatac |
381 |
Q |
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| T |
2836454 |
gtttgtacacattagaactagccttgtttaatac |
2836421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 2836896 - 2836741
Alignment:
| Q |
1 |
aaactgagaaaaataaacaatactagtactcatgaaaagtgaaaacagaggagagagataaggatttggaagaaaaaggtaacaaaaattgaacaaatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2836896 |
aaactgagaaaaataaacaatactagtactcatgaaaagtgaaaacagaggagagagataaggatttggaagaaaaaggtaacaaaaattgaacatatat |
2836797 |
T |
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| Q |
101 |
ccgatgattcttgcacatcaggagagaatgagttcttttatgtgaaattcttttaa |
156 |
Q |
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| T |
2836796 |
ccgatgattcttgcacatcaagagagaatgagttcttttaagtgaaattcttttaa |
2836741 |
T |
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